Comments (4)
This pair of reads have too many mismatches (5 in total).
AfterQC will skip correcting the overlaps with mismatches > 3. This is to avoid over-correction.
from afterqc.
It makes sense! Can the threshold be adjusted?
from afterqc.
I will update AfterQC to make it adjustable.
from afterqc.
Fantastic! Thanks
from afterqc.
Related Issues (20)
- Removal of PCR/RNA primers HOT 1
- Tool to keep reads where all bases are above a specific quality score. HOT 2
- output gzipped data HOT 3
- ValueError: max() arg is an empty sequence HOT 3
- AterQc HOT 2
- Report
- output files are truncated
- filter only for poly-X but nothing else HOT 9
- Afterqc with pypy HOT 3
- Issue with overlap analysis HOT 4
- Read length distributon after processing HOT 7
- question about AfterQC/preprocesser.py
- AfterQC total bases calculation HOT 1
- Float division by zero in circledetector.py
- AfterQC in FASTQ joined
- Error despite creating env with 2.7 in conda
- Remove overrepresented sequences
- String index out of range. HOT 1
- bubble
- My bioconda install Python version
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from afterqc.