Comments (4)
sfchen
commented on July 25, 2024
Okay, but it will only be available for single-end data.
BTW, how do you think about fastp now, does it help for your work?
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BenoitFiset
commented on July 25, 2024
It's getting there... I guess once the trimming "tests" reach a conclusion, I should use more and more in production and forget about FastQC :)
Thanks for the quick turn over.
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sfchen
commented on July 25, 2024
Thank you!
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sfchen
commented on July 25, 2024
Implemented in the latest release v0.17.1
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Related Issues (20)
- I obtained different 'insert size peaks' when I used different options for the same paired-end sequencing sample.
- Insert size estimation and report interpretation HOT 2
- fastp in my pip package
- aborted core dumped
- Can fastp draw PNG format?
- Very short fragments
- No mouse ouver in kmer matrix
- Can fastq remove read sequences with duplicate IDs?
- Feature request: add option to set lower limit of unqualified quality
- Missing most reads after given r2 adapter HOT 1
- Interpretation help file?
- Store duplicate reads
- Split interleaved output
- interleaved output is not reproducible with multiple threads HOT 2
- Not able to install on Mac book M1 HOT 4
- Keep occurred error message from the beginning < igzip: invalid gzip header found >
- Nanopore data filtering using fastp HOT 1
- No adapter detected for read and Q20 bases: 4747174600(99.9999%)
- fastp not removing all Illumina universal adapter sequences as indicated by FastQC HOT 4
- few options throw 'undefined error' -reg
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