Comments (4)
I don't see the force being calculated twice. Each time through the loop it prints two lines (one with force_old
and one with force_new
). And NUM_PARTICLECORR
is clearly 2, since there are lines with index=0
and index=1
. So there should be four lines printed for each step, which is what it shows. Am I missing something?
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I don't see the force being calculated twice. Each time through the loop it prints two lines (one with
force_old
and one withforce_new
). AndNUM_PARTICLECORR
is clearly 2, since there are lines withindex=0
andindex=1
. So there should be four lines printed for each step, which is what it shows. Am I missing something?
Maybe I didn't express the question clearly.
There are two identical step 1110
being output. Is it normal to output twice? Then why are force_old (0.0 and -13.897074 for index=0) and force_new (0.021701 and -13.875373 for index=0) different each time they are output?
The twice outputs imply that the execute() function of this forcekernel was executed twice. Where should this function be called separately? I can only think of one place: each step LanveginIntegrator is executed. context->calcForcesAndEnergy(true, false, getIntegrationForceGroups());
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Can you show your code that executes it? If the force is being evaluated twice, there's generally a reason for it.
from openmm.
Can you show your code that executes it? If the force is being evaluated twice, there's generally a reason for it.
Sorry to reply so late. I had found the problem -- I made a simple mistake when writing the simulation run script. For testing purposes, I ran the simulation for one step and then output the energy using getState()
each time. So, it is the function getState()
that leads to the second output of Step 1110
.
Thanks for your reply!
Best regards.
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