Comments (6)
Thanks for reporting @LucianSheen. I've not had problems running the docker file myself recently, but admittedly I've not run it for very long simulations. I'll try again locally and see if I can reproduce. Just to clarify, did you rebuild the image from the master branch or use the dockerhub version?
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So I've been trying to test this out. The 5 second run of the Docker image worked fine on my Linux machine, but took 10 hours. It has 20 processers and 64GB ram and after it finished the swap memory had been used, so I suspect it took up quite a bit of memory while running.
A simulation of 0.5 seconds on my more modest laptop (Mac M2) failed with a similar error to you. I suspect then that it's running out of memory in the image and failing. What OS/specs are your machine?
Unfortunately I suspect it will require quite a powerful machine to run the full thing, unless Sibernetic (or the Python interface) can be optimised more...
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Hi @LucianSheen. I've not been involved with that code, but I see @portegys over there has helped you out with some answers.
BTW, there is a new Python visualisation/replay tool for the Boyle Berri Cohen model at https://github.com/OpenSourceBrain/CelegansNeuromechanicalGaitModulation.
See also https://github.com/openworm/CE_locomotion
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Related Issues (20)
- Use Python 3 as main version in Docker stack
- The openworm.org SSL certificate is valid for github.com, *.github.com, but not openworm.org. browser.openworm.org sends an empty reply over HTTPS. HOT 2
- Use latest owmeta and c302 HOT 1
- Create GSuite and GitHub account for automation HOT 1
- Use pip installed neuron in Dockerfile as opposed to building
- Docker build failing with latest owmeta HOT 3
- Possible bug down the dependency chain in owmeta. HOT 7
- Use virtualenv for Docker Python packages
- Use a more efficient means for recording Sibernetic simulation video
- Pin versions in Dockerfile for releases HOT 1
- Cannot Join Slack Channel HOT 2
- Docker GPU support HOT 2
- Configuration file failed with Version 0.9.3 HOT 6
- Corrupted video and data. HOT 1
- The first time running version 0.9.3 of this project failed. HOT 5
- Possible memory leak - openworm 0.9.4 HOT 1
- docker image isn't showing HOT 2
- Build.cmd & Run.cmd referencing wrong version? HOT 5
- Create JupyterLab based version of Dockerfile
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