Comments (10)
JamesEMcClure
commented on August 20, 2024
Can you attach the input file that you used and the output of the simulation?
Usually if the relative permeability is negative it means the flow is blocked for some reason (i.e. pore space is blocked in the image). It would be good to check that the image is being read into the simulator correctly (by visualizing the input file in python).
from lbpm.
ahmedsrizk95
commented on August 20, 2024
Here is the input file:
> Domain {
> Filename = "mask_water_flooded_water_and_oil.raw.morphdrain.raw"
> ReadType = "8bit" // data type
> nproc = 2, 2, 2 // process grid
> n = 300, 297, 300 // sub-domain size
> N = 600, 594, 600 // size of original image
> voxel_length = 7.0 // voxel length (in microns)
> ReadValues = -1, 0, 1, 2 // labels within the original image
> WriteValues = -1, 0, 1, 2 // associated labels to be used by LBPM
> BC = 4 // boundary condition type (0 for flux)
> Sw = 0.18
> }
> Color {
> tauA = 0.7; // relaxation time for fluid A (labeled as "1")
> tauB = 0.7; // relaxation time for fluid B (labeled as "2")
> rhoA = 1.0; // density for fluid A (in lattice units)
> rhoB = 1.0; // density for fluid B (in lattice units)
> alpha = 1e-3; // controls the surface tension
> beta = 0.95; // controls the interface width
> F = 0, 0, 0 // controls the external force
> Restart = false // initialize simulation from restart file?
> timestepMax = 1000000 // maximum number of timesteps to perform before exit
> ComponentLabels = 0, -1 // number of immobile component labels in the input image
> ComponentAffinity = -1.0, -0.9 // wetting condition for each immobile component
> flux = -10.0 // volumetric flux at the z-inlet in voxels per timestep
> }
> Analysis {
> analysis_interval = 1000 // Frequency to perform analysis
> visualization_interval = 100000 // Frequency to write visualization data
> restart_interval = 10000 // Frequency to write restart data
> restart_file = "Restart" // Filename to use for restart file (will append rank)
> N_threads = 4 // Number of threads to use for analysis
> load_balance = "independent" // Load balance method to use: "none", "default", "independent"
> }
> Visualization {
> }
`
Here is the output file:
> Your job looked like:
>
> ------------------------------------------------------------
> # LSBATCH: User input
> #BSUB -n 8
> #BSUB -q general
> #BSUB -R "span[ptile=8]"
> #BSUB -W 48:00
> #BSUB -J colorlbpm
> #BSUB -o colorlbpm.out
> #BSUB -e colorlbpm.err
>
> mpirun -np 8 /apps/lbpm/lbpm-2020-openmpi-2.1.5-cpu/bin/lbpm_color_simulator input.db
>
> ------------------------------------------------------------
>
> TERM_RUNLIMIT: job killed after reaching LSF run time limit.
> Exited with exit code 140.
>
> Resource usage summary:
>
> CPU time : 352491.00 sec.
> Max Memory : 52459 MB
> Average Memory : 47800.23 MB
> Total Requested Memory : -
> Delta Memory : -
> Max Swap : 64220 MB
> Max Processes : 12
> Max Threads : 137
> Run time : 172810 sec.
> Turnaround time : 177784 sec.
>
> The output (if any) follows:
>
> [1622227895.616481] [hpc075:27550:0] mxm.c:196 MXM WARN The 'ulimit -s' on the system is set to 'unlimited'. This may have negative performance implications. Please set the stack size to the default value (10240)
> [1622227895.615995] [hpc075:27554:0] mxm.c:196 MXM WARN The 'ulimit -s' on the system is set to 'unlimited'. This may have negative performance implications. Please set the stack size to the default value (10240)
> [1622227895.616992] [hpc075:27454:0] mxm.c:196 MXM WARN The 'ulimit -s' on the system is set to 'unlimited'. This may have negative performance implications. Please set the stack size to the default value (10240)
> [1622227895.617036] [hpc075:27548:0] mxm.c:196 MXM WARN The 'ulimit -s' on the system is set to 'unlimited'. This may have negative performance implications. Please set the stack size to the default value (10240)
> [1622227895.616838] [hpc075:27555:0] mxm.c:196 MXM WARN The 'ulimit -s' on the system is set to 'unlimited'. This may have negative performance implications. Please set the stack size to the default value (10240)
> [1622227895.616710] [hpc075:27556:0] mxm.c:196 MXM WARN The 'ulimit -s' on the system is set to 'unlimited'. This may have negative performance implications. Please set the stack size to the default value (10240)
> [1622227895.617379] [hpc075:27554:0] mxm.c:196 MXM WARN The 'ulimit -s' on the system is set to 'unlimited'. This may have negative performance implications. Please set the stack size to the default value (10240)
> [1622227895.617379] [hpc075:27552:0] mxm.c:196 MXM WARN The 'ulimit -s' on the system is set to 'unlimited'. This may have negative performance implications. Please set the stack size to the default value (10240)
> [1622227895.617556] [hpc075:27557:0] mxm.c:196 MXM WARN The 'ulimit -s' on the system is set to 'unlimited'. This may have negative performance implications. Please set the stack size to the default value (10240)
> [1622227895.617814] [hpc075:27556:0] mxm.c:196 MXM WARN The 'ulimit -s' on the system is set to 'unlimited'. This may have negative performance implications. Please set the stack size to the default value (10240)
> [1622227895.618229] [hpc075:27454:0] mxm.c:196 MXM WARN The 'ulimit -s' on the system is set to 'unlimited'. This may have negative performance implications. Please set the stack size to the default value (10240)
> [1622227895.617653] [hpc075:27550:0] mxm.c:196 MXM WARN The 'ulimit -s' on the system is set to 'unlimited'. This may have negative performance implications. Please set the stack size to the default value (10240)
> [1622227895.618115] [hpc075:27555:0] mxm.c:196 MXM WARN The 'ulimit -s' on the system is set to 'unlimited'. This may have negative performance implications. Please set the stack size to the default value (10240)
> [1622227895.618528] [hpc075:27552:0] mxm.c:196 MXM WARN The 'ulimit -s' on the system is set to 'unlimited'. This may have negative performance implications. Please set the stack size to the default value (10240)
> [1622227895.619045] [hpc075:27557:0] mxm.c:196 MXM WARN The 'ulimit -s' on the system is set to 'unlimited'. This may have negative performance implications. Please set the stack size to the default value (10240)
> [1622227895.618948] [hpc075:27548:0] mxm.c:196 MXM WARN The 'ulimit -s' on the system is set to 'unlimited'. This may have negative performance implications. Please set the stack size to the default value (10240)
> --------------------------------------------------------------------------
> A process has executed an operation involving a call to the
> "fork()" system call to create a child process. Open MPI is currently
> operating in a condition that could result in memory corruption or
> other system errors; your job may hang, crash, or produce silent
> data corruption. The use of fork() (or system() or other calls that
> create child processes) is strongly discouraged.
>
> The process that invoked fork was:
>
> Local host: [[35581,1],0] (PID 27454)
>
> If you are *absolutely sure* that your application will successfully
> and correctly survive a call to fork(), you may disable this warning
> by setting the mpi_warn_on_fork MCA parameter to 0.
> --------------------------------------------------------------------------
> ********************************************************
> Running Color LBM
> ********************************************************
> voxel length = 7.000000 micron
> voxel length = 7.000000 micron
> Input media: mask_water_flooded_water_and_oil.raw.morphdrain.raw
> Relabeling 4 values
> oldvalue=-1, newvalue =-1
> oldvalue=0, newvalue =0
> oldvalue=1, newvalue =1
> oldvalue=2, newvalue =2
> Dimensions of segmented image: 600 x 594 x 600
> Reading 8-bit input data
> Read segmented data from mask_water_flooded_water_and_oil.raw.morphdrain.raw
> Label=-1, Count=0
> Label=0, Count=183349844
> Label=1, Count=24876146
> Label=2, Count=5614010
> Distributing subdomains across 8 processors
> Process grid: 2 x 2 x 2
> Subdomain size: 300 x 297 x 300
> Size of transition region: 0
> NOTE:Non-periodic BC is applied, but the number of Z-outlet layers is not specified (or is smaller than 3 voxels)
> the number of Z-outlet layer is reset to 3 voxels, saturated with phase label=2
> NOTE:Non-periodic BC is applied, but the number of Z-inlet layers is not specified (or is smaller than 3 voxels)
> the number of Z-inlet layer is reset to 3 voxels, saturated with phase label=1
> Media porosity = 0.139691
> Initialized solid phase -- Converting to Signed Distance function
> Domain set.
> Create ScaLBL_Communicator
> Set up memory efficient layout, 3973455 | 3973472 | 27269996
> Allocating distributions
> Setting up device map and neighbor list
> Component labels: 2
> label=0, affinity=-1.000000, volume fraction==0.865469
> label=-1, affinity=-0.900000, volume fraction==0.000000
> Initializing distributions
> Initializing phase field
> ********************************************************
> No. of timesteps: 1000000
> Affinities - rank 0:
> Main: 0
> Thread 1: 2
> Thread 2: 4
> Thread 3: 6
> Thread 4: 8
> Thread 5: 10
> Thread 6: 12
> Thread 7: 14
> Thread 8: 16
> Thread 9: 18
> Thread 10: 20
> Thread 11: 22
> 1000 0.997947
> 2000 0.995836
> 3000 0.993976
> 4000 0.992289
> 5000 0.990737
> 6000 0.989292
> 7000 0.987935
> 8000 0.986657
> 9000 0.985444
> 10000 0.984290
> 11000 0.983189
> 12000 0.982132
> 13000 0.981114
> 14000 0.980132
> 15000 0.979182
> 16000 0.978261
> 17000 0.977367
> 18000 0.976495
> 19000 0.975644
> 20000 0.974816
> 21000 0.974008
> 22000 0.973219
> 23000 0.972448
> 24000 0.971693
> 25000 0.970953
> 26000 0.970228
> 27000 0.969516
> 28000 0.968817
> 29000 0.968131
> 30000 0.967457
> 31000 0.966794
> --------------------------------------------------------------------------
> mpirun noticed that process rank 0 with PID 0 on node hpc075 exited on signal 11 (Segmentation fault).
> --------------------------------------------------------------------------
>
>
> PS:
>
> Read file <colorlbpm.err> for stderr output of this job.
Note: The simulation exited after the time limit assigned for the job has been reached.
from lbpm.
JamesEMcClure
commented on August 20, 2024
This is exiting because you are hitting the requested walltime (48 hrs = 172,800 seconds). The scheduler is killing the job once the walltime is exceeded,
Note: The simulation exited after the time limit assigned for the job has been reached
For a CPU based workload, you can specify smaller sub-domains. You will be able to run this job on many more than 8 processor cores with smaller sub-domains assigned to each core. The time-to-solution will be significantly faster if you do this. For a CPU-based system it would be interesting to try the following domain decomposition
nproc = 6, 9, 6 // process grid
n = 50, 33, 50 // sub-domain size
This will require 6*6*9 = 324 processor cores, so you will need to launch it with
mpirun -np 324 /apps/lbpm/lbpm-2020-openmpi-2.1.5-cpu/bin/lbpm_color_simulator input.db
And you will need to request 324 cores from LSF. I'm not sure if you have this many cores available on your system, but LBPM should scale well enough to run this way if you do.
from lbpm.
ahmedsrizk95
commented on August 20, 2024
Do you think running like this will make the relative permeability values correct? Because I have run another case with only sub volume of 100*100*100 of the original image with offset 250, 250, 0 on GPU it is still showing negative values:
Here is the input file:
> Domain {
> Filename = "mask_water_flooded_water_and_oil.raw.morphdrain.raw"
> ReadType = "8bit" // data type
> nproc = 1, 1, 1 // process grid
> n = 100, 100, 100 // sub-domain size
> N = 600, 594, 600 // size of original image
> offset = 250, 250, 0
> voxel_length = 7.0 // voxel length (in microns)
> ReadValues = -1, 0, 1, 2 // labels within the original image
> WriteValues = -1, 0, 1, 2 // associated labels to be used by LBPM
> BC = 4 // boundary condition type (0 for flux)
> Sw = 0.18
> }
> Color {
> tauA = 0.7; // relaxation time for fluid A (labeled as "1")
> tauB = 0.7; // relaxation time for fluid B (labeled as "2")
> rhoA = 1.0; // density for fluid A (in lattice units)
> rhoB = 1.0; // density for fluid B (in lattice units)
> alpha = 1e-3; // controls the surface tension
> beta = 0.95; // controls the interface width
> F = 0, 0, 0 // controls the external force
> Restart = false // initialize simulation from restart file?
> timestepMax = 1000000 // maximum number of timesteps to perform before exit
> ComponentLabels = 0, -1 // number of immobile component labels in the input image
> ComponentAffinity = -1.0, -0.9 // wetting condition for each immobile component
> flux = -10.0 // volumetric flux at the z-inlet in voxels per timestep
> }
> Analysis {
> analysis_interval = 1000 // Frequency to perform analysis
> visualization_interval = 100000 // Frequency to write visualization data
> restart_interval = 1000000 // Frequency to write restart data
> restart_file = "Restart" // Filename to use for restart file (will append rank)
> N_threads = 4 // Number of threads to use for analysis
> load_balance = "independent" // Load balance method to use: "none", "default", "independent"
> }
> Visualization {
> }
>
>
Here is the output file:
> Your job looked like:
>
> ------------------------------------------------------------
> # LSBATCH: User input
> #BSUB -n 1
> #BSUB -q gpu
> #BSUB -W 10:00
> #BSUB -J colorlbpm
> #BSUB -o colorlbpm.%J.out
> #BSUB -e colorlbpm.%J.err
>
> mpirun --mca pml ob1 -np 1 /apps/lbpm/lbpm-2020-openmpi-2.1.5-gpu-with-cuda/bin/lbpm_color_simulator input.db
>
> ------------------------------------------------------------
>
> Successfully completed.
>
> Resource usage summary:
>
> CPU time : 7863.33 sec.
> Max Memory : 538 MB
> Average Memory : 524.95 MB
> Total Requested Memory : -
> Delta Memory : -
> Max Swap : 285055 MB
> Max Processes : 5
> Max Threads : 26
> Run time : 7800 sec.
> Turnaround time : 7801 sec.
>
> The output (if any) follows:
>
> --------------------------------------------------------------------------
> A process has executed an operation involving a call to the
> "fork()" system call to create a child process. Open MPI is currently
> operating in a condition that could result in memory corruption or
> other system errors; your job may hang, crash, or produce silent
> data corruption. The use of fork() (or system() or other calls that
> create child processes) is strongly discouraged.
>
> The process that invoked fork was:
>
> Local host: [[22440,1],0] (PID 29436)
>
> If you are *absolutely sure* that your application will successfully
> and correctly survive a call to fork(), you may disable this warning
> by setting the mpi_warn_on_fork MCA parameter to 0.
> --------------------------------------------------------------------------
> ********************************************************
> Running Color LBM
> ********************************************************
> MPI rank=0 will use GPU ID 0 / 2
> voxel length = 7.000000 micron
> voxel length = 7.000000 micron
> Input media: mask_water_flooded_water_and_oil.raw.morphdrain.raw
> Relabeling 4 values
> oldvalue=-1, newvalue =-1
> oldvalue=0, newvalue =0
> oldvalue=1, newvalue =1
> oldvalue=2, newvalue =2
> Dimensions of segmented image: 600 x 594 x 600
> Reading 8-bit input data
> Read segmented data from mask_water_flooded_water_and_oil.raw.morphdrain.raw
> Label=-1, Count=0
> Label=0, Count=183349844
> Label=1, Count=24876146
> Label=2, Count=5614010
> Distributing subdomains across 1 processors
> Process grid: 1 x 1 x 1
> Subdomain size: 100 x 100 x 100
> Size of transition region: 0
> NOTE:Non-periodic BC is applied, but the number of Z-inlet layers is not specified (or is smaller than 3 voxels)
> the number of Z-inlet layer is reset to 3 voxels, saturated with phase label=1
> NOTE:Non-periodic BC is applied, but the number of Z-outlet layers is not specified (or is smaller than 3 voxels)
> the number of Z-outlet layer is reset to 3 voxels, saturated with phase label=2
> Media porosity = 0.192770
> Initialized solid phase -- Converting to Signed Distance function
> Domain set.
> Create ScaLBL_Communicator
> Set up memory efficient layout, 248168 | 248192 | 1061208
> Allocating distributions
> Setting up device map and neighbor list
> Component labels: 2
> label=0, affinity=-1.000000, volume fraction==0.782464
> label=-1, affinity=-0.900000, volume fraction==0.000000
> Initializing distributions
> Initializing phase field
> ********************************************************
> No. of timesteps: 1000000
> Affinities - rank 0:
> Main: 0
> Thread 1: 2
> Thread 2: 4
> Thread 3: 6
> Thread 4: 8
> Thread 5: 10
> Thread 6: 12
> Thread 7: 14
> Thread 8: 16
> Thread 9: 18
> Thread 10: 20
> Thread 11: 22
> 1000 0.915216
> 2000 0.862458
> 3000 0.824618
> 4000 0.797320
> 5000 0.777660
> 6000 0.763281
> 7000 0.752623
> 8000 0.744505
> 9000 0.738750
> 10000 0.734629
> 11000 0.731253
> 12000 0.728267
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> 999000 0.723771
> 1000000 0.723771
> -------------------------------------------------------------------
> ********************************************************
> CPU time = 0.007796
> Lattice update rate (per core)= 31.835712 MLUPS
> Lattice update rate (total)= 31.835712 MLUPS
> ********************************************************
>
>
> PS:
>
> Read file <colorlbpm.351095.err> for stderr output of this job.
and here is the timelog.csv:
> sw krw krn vw vn pw pn
> 0.22561 -0.023007 -0.50221 -0.0001142 -0.0024929 0.32816 0.31779
> 0.23232 -0.057258 -0.6922 -0.00029141 -0.0035229 0.32658 0.30451
> 0.24838 -0.10366 -0.79996 -0.00053693 -0.0041434 0.32635 0.2937
> 0.27085 -0.1605 -0.85578 -0.00084171 -0.0044881 0.32668 0.28483
> 0.29859 -0.23099 -0.86305 -0.0012223 -0.0045666 0.3273 0.27779
> 0.3294 -0.30937 -0.83563 -0.0016476 -0.0044502 0.3271 0.27216
> 0.36284 -0.40917 -0.77231 -0.0021894 -0.0041326 0.32565 0.26721
> 0.39775 -0.49528 -0.71383 -0.0026598 -0.0038334 0.32342 0.26326
> 0.43451 -0.59108 -0.64638 -0.0031823 -0.0034801 0.32048 0.26035
> 0.47125 -0.69845 -0.55068 -0.0037673 -0.0029702 0.31732 0.2584
> 0.50853 -0.81315 -0.44142 -0.0043924 -0.0023845 0.31449 0.2565
> 0.54604 -0.91653 -0.34571 -0.0049574 -0.0018699 0.31182 0.25527
> 0.57364 -1.0014 -0.26681 -0.0054228 -0.0014448 0.30947 0.25367
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> 0.76082 -1.2604 -0.031132 -0.0068319 -0.00016874 0.29817 0.24234
> 0.76094 -1.2605 -0.031071 -0.0068321 -0.00016841 0.29816 0.24234
> 0.76108 -1.2605 -0.030992 -0.0068324 -0.00016798 0.29816 0.24233
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> 0.76175 -1.2607 -0.030855 -0.0068331 -0.00016724 0.29817 0.2423
> 0.76188 -1.2607 -0.030828 -0.006833 -0.00016709 0.29818 0.2423
> 0.76203 -1.2607 -0.030819 -0.006833 -0.00016704 0.29817 0.2423
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> 0.76242 -1.2607 -0.03079 -0.006833 -0.00016689 0.29817 0.24228
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> 0.7629 -1.2608 -0.030657 -0.0068337 -0.00016617 0.29817 0.24226
> 0.763 -1.2608 -0.030626 -0.0068339 -0.000166 0.29817 0.24226
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> 0.76737 -1.2609 -0.030542 -0.0068344 -0.00016554 0.2986 0.24218
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> 0.76771 -1.2572 -0.034162 -0.0068143 -0.00018517 0.29867 0.24217
> 0.76817 -1.2606 -0.031083 -0.0068324 -0.00016847 0.29854 0.24219
> 0.76837 -1.2604 -0.031266 -0.0068313 -0.00016946 0.29847 0.24222
> 0.76889 -1.2619 -0.029652 -0.0068392 -0.00016072 0.29842 0.24221
> 0.76892 -1.2619 -0.029605 -0.0068397 -0.00016046 0.29841 0.24221
> 0.76893 -1.262 -0.029597 -0.0068399 -0.00016042 0.29841 0.24222
> 0.76894 -1.2621 -0.029551 -0.0068402 -0.00016017 0.29841 0.24222
> 0.76895 -1.2621 -0.029555 -0.0068403 -0.00016019 0.2984 0.24222
> 0.76898 -1.2621 -0.029519 -0.0068405 -0.00015999 0.2984 0.24223
> 0.76896 -1.2621 -0.029506 -0.0068405 -0.00015992 0.2984 0.24223
> 0.76896 -1.2621 -0.029507 -0.0068404 -0.00015992 0.29839 0.24223
> 0.76895 -1.2621 -0.029521 -0.0068403 -0.00016 0.29839 0.24224
> 0.76895 -1.2621 -0.029535 -0.0068402 -0.00016007 0.29839 0.24224
> 0.76897 -1.2621 -0.029536 -0.0068402 -0.00016008 0.29836 0.24224
> 0.76901 -1.2621 -0.029543 -0.0068402 -0.00016012 0.29837 0.24224
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> 0.76902 -1.262 -0.029569 -0.0068398 -0.00016026 0.29837 0.24224
> 0.76904 -1.262 -0.029562 -0.0068398 -0.00016022 0.29837 0.24224
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> 0.77094 -1.2623 -0.029329 -0.0068412 -0.00015896 0.29833 0.24222
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> 0.77087 -1.2623 -0.029325 -0.0068413 -0.00015893 0.29831 0.24223
> 0.77088 -1.2623 -0.029339 -0.0068412 -0.00015901 0.2983 0.24223
> 0.77087 -1.2623 -0.029347 -0.0068411 -0.00015905 0.2983 0.24223
> 0.77088 -1.2623 -0.029351 -0.0068411 -0.00015907 0.29831 0.24223
> 0.77089 -1.2623 -0.02935 -0.0068411 -0.00015907 0.29831 0.24223
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> 0.77111 -1.2623 -0.029282 -0.0068413 -0.0001587 0.2983 0.24224
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> 0.77114 -1.2623 -0.029275 -0.0068413 -0.00015866 0.29829 0.24224
> 0.77114 -1.2623 -0.029273 -0.0068413 -0.00015865 0.2983 0.24224
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> 0.77115 -1.2623 -0.029267 -0.0068414 -0.00015862 0.29829 0.24224
> 0.77116 -1.2623 -0.029264 -0.0068414 -0.0001586 0.29829 0.24224
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> 0.77116 -1.2623 -0.029259 -0.0068414 -0.00015857 0.29829 0.24224
> 0.77117 -1.2624 -0.029254 -0.0068414 -0.00015855 0.29829 0.24224
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> 0.77117 -1.2624 -0.029254 -0.0068414 -0.00015855 0.29829 0.24224
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> 0.77116 -1.2623 -0.029272 -0.0068414 -0.00015864 0.29829 0.24224
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> 0.77116 -1.2623 -0.029271 -0.0068414 -0.00015864 0.29829 0.24224
> 0.77116 -1.2623 -0.029271 -0.0068414 -0.00015864 0.29829 0.24224
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> 0.77117 -1.2623 -0.029271 -0.0068414 -0.00015864 0.29829 0.24224
> 0.77117 -1.2623 -0.029271 -0.0068414 -0.00015864 0.29829 0.24224
> 0.77117 -1.2623 -0.029271 -0.0068414 -0.00015864 0.29829 0.24224
> 0.77117 -1.2623 -0.029271 -0.0068414 -0.00015864 0.29829 0.24224
> 0.77117 -1.2623 -0.029266 -0.0068414 -0.00015861 0.29829 0.24224
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> 0.77118 -1.2623 -0.029263 -0.0068414 -0.0001586 0.29829 0.24224
> 0.77119 -1.2623 -0.029261 -0.0068414 -0.00015858 0.2983 0.24224
> 0.77118 -1.2623 -0.029269 -0.0068414 -0.00015863 0.2983 0.24224
> 0.77118 -1.2623 -0.02927 -0.0068414 -0.00015863 0.2983 0.24224
> 0.77118 -1.2623 -0.02927 -0.0068414 -0.00015863 0.2983 0.24224
> 0.77119 -1.2623 -0.029269 -0.0068414 -0.00015863 0.2983 0.24224
> 0.77119 -1.2623 -0.029269 -0.0068414 -0.00015863 0.29831 0.24224
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> 0.77142 -1.2624 -0.029197 -0.0068418 -0.00015823 0.29833 0.24225
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> 0.77138 -1.2624 -0.029223 -0.0068416 -0.00015837 0.2983 0.24224
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> 0.77138 -1.2624 -0.029222 -0.0068416 -0.00015837 0.2983 0.24224
> 0.77138 -1.2624 -0.029222 -0.0068416 -0.00015837 0.2983 0.24224
> 0.77138 -1.2624 -0.029222 -0.0068416 -0.00015837 0.2983 0.24224
> 0.77138 -1.2624 -0.029222 -0.0068416 -0.00015837 0.2983 0.24224
> 0.77138 -1.2624 -0.029222 -0.0068416 -0.00015837 0.2983 0.24224
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> 0.77138 -1.2624 -0.029222 -0.0068416 -0.00015837 0.2983 0.24224
> 0.77138 -1.2624 -0.029222 -0.0068416 -0.00015837 0.2983 0.24224
> 0.77138 -1.2624 -0.029222 -0.0068416 -0.00015837 0.2983 0.24224
> 0.77138 -1.2624 -0.029222 -0.0068416 -0.00015837 0.2983 0.24224
> 0.77138 -1.2624 -0.029222 -0.0068416 -0.00015837 0.2983 0.24224
> 0.77138 -1.2624 -0.029222 -0.0068416 -0.00015837 0.2983 0.24224
> 0.77138 -1.2624 -0.029222 -0.0068416 -0.00015837 0.2983 0.24224
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> 0.77138 -1.2624 -0.029223 -0.0068416 -0.00015838 0.2983 0.24224
> 0.77138 -1.2624 -0.029223 -0.0068416 -0.00015838 0.2983 0.24224
> 0.77138 -1.2624 -0.029223 -0.0068416 -0.00015838 0.2983 0.24224
> 0.77137 -1.2624 -0.029225 -0.0068416 -0.00015839 0.2983 0.24224
> 0.77137 -1.2624 -0.029225 -0.0068416 -0.00015839 0.2983 0.24224
> 0.77137 -1.2624 -0.029225 -0.0068416 -0.00015839 0.2983 0.24224
> 0.77137 -1.2624 -0.029225 -0.0068416 -0.00015839 0.2983 0.24224
> 0.77137 -1.2624 -0.029225 -0.0068416 -0.00015839 0.2983 0.24224
> 0.77137 -1.2624 -0.029225 -0.0068416 -0.00015839 0.2983 0.24224
> 0.77137 -1.2624 -0.029225 -0.0068416 -0.00015839 0.2983 0.24224
> 0.77137 -1.2624 -0.029225 -0.0068416 -0.00015839 0.2983 0.24224
> 0.77137 -1.2624 -0.029225 -0.0068416 -0.00015839 0.2983 0.24224
> 0.77137 -1.2624 -0.029225 -0.0068416 -0.00015839 0.2983 0.24224
> 0.77137 -1.2624 -0.029225 -0.0068416 -0.00015839 0.2983 0.24224
> 0.77137 -1.2624 -0.029225 -0.0068416 -0.00015839 0.2983 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.029229 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.02923 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.02923 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.02923 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.02923 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.02923 -0.0068416 -0.00015841 0.29829 0.24224
> 0.77136 -1.2624 -0.02923 -0.0068416 -0.00015841 0.29828 0.24224
> 0.77136 -1.2624 -0.02923 -0.0068416 -0.00015841 0.29828 0.24224
> 0.77136 -1.2624 -0.02923 -0.0068416 -0.00015841 0.29828 0.24224
> 0.77136 -1.2624 -0.02923 -0.0068416 -0.00015841 0.29828 0.24224
> 0.77136 -1.2624 -0.02923 -0.0068416 -0.00015841 0.29828 0.24224
> 0.77137 -1.2624 -0.029231 -0.0068416 -0.00015842 0.29828 0.24224
> 0.77137 -1.2624 -0.029231 -0.0068416 -0.00015842 0.29828 0.24224
> 0.77137 -1.2624 -0.029231 -0.0068416 -0.00015842 0.29828 0.24224
> 0.77137 -1.2624 -0.029231 -0.0068416 -0.00015842 0.29828 0.24224
> 0.77137 -1.2624 -0.029231 -0.0068416 -0.00015842 0.29828 0.24224
> 0.77137 -1.2624 -0.029231 -0.0068416 -0.00015842 0.29828 0.24224
> 0.77137 -1.2624 -0.029231 -0.0068416 -0.00015842 0.29828 0.24224
> 0.77137 -1.2624 -0.029231 -0.0068416 -0.00015842 0.29828 0.24224
> 0.77137 -1.2624 -0.029231 -0.0068416 -0.00015842 0.29828 0.24224
> 0.77137 -1.2624 -0.029231 -0.0068416 -0.00015842 0.29828 0.24224
> 0.77137 -1.2624 -0.029231 -0.0068416 -0.00015842 0.29828 0.24224
> 0.77137 -1.2624 -0.029231 -0.0068416 -0.00015842 0.29828 0.24224
> 0.77137 -1.2624 -0.029231 -0.0068416 -0.00015842 0.29828 0.24224
> 0.77137 -1.2624 -0.029231 -0.0068416 -0.00015842 0.29828 0.24224
> 0.77137 -1.2624 -0.029231 -0.0068416 -0.00015842 0.29828 0.24224
> 0.77137 -1.2624 -0.029231 -0.0068416 -0.00015842 0.29828 0.24224
> 0.77137 -1.2624 -0.029231 -0.0068416 -0.00015842 0.29828 0.24224
> 0.77137 -1.2624 -0.029231 -0.0068416 -0.00015842 0.29828 0.24224
> 0.77137 -1.2624 -0.029231 -0.0068416 -0.00015842 0.29828 0.24224
> 0.77137 -1.2624 -0.029231 -0.0068416 -0.00015842 0.29828 0.24224
> 0.77137 -1.2624 -0.029231 -0.0068416 -0.00015842 0.29828 0.24224
> 0.77137 -1.2624 -0.029231 -0.0068416 -0.00015842 0.29828 0.24224
> 0.77137 -1.2624 -0.029231 -0.0068416 -0.00015842 0.29828 0.24224
> 0.77137 -1.2624 -0.029231 -0.0068416 -0.00015842 0.29828 0.24224
> 0.77137 -1.2624 -0.029231 -0.0068416 -0.00015842 0.29828 0.24224
> 0.77137 -1.2624 -0.029231 -0.0068416 -0.00015842 0.29828 0.24224
> 0.77137 -1.2624 -0.029231 -0.0068416 -0.00015842 0.29827 0.24224
> 0.77137 -1.2624 -0.029231 -0.0068416 -0.00015842 0.29827 0.24224
> 0.77137 -1.2624 -0.029231 -0.0068416 -0.00015842 0.29827 0.24224
> 0.77137 -1.2624 -0.029231 -0.0068416 -0.00015842 0.29827 0.24224
> 0.77137 -1.2624 -0.029231 -0.0068416 -0.00015842 0.29827 0.24224
> 0.77137 -1.2624 -0.029231 -0.0068416 -0.00015842 0.29827 0.24224
> 0.77137 -1.2624 -0.029231 -0.0068416 -0.00015842 0.29827 0.24224
> 0.77137 -1.2624 -0.029231 -0.0068416 -0.00015842 0.29827 0.24224
> 0.77137 -1.2624 -0.029231 -0.0068416 -0.00015842 0.29827 0.24224
> 0.77137 -1.2624 -0.029231 -0.0068416 -0.00015842 0.29827 0.24224
> 0.77137 -1.2624 -0.029231 -0.0068416 -0.00015842 0.29827 0.24224
> 0.77137 -1.2624 -0.029231 -0.0068416 -0.00015842 0.29827 0.24224
>
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JamesEMcClure
commented on August 20, 2024
Note that you are running an unsteady simulation here, since you have specified BC = 4 in the Domain section with flux = -10.0 in the Color section. This means you will inject water into the system such that the water saturation increases until breakthrough occurs (the timelog values verify this). Usually relative permeability is measured with a steady-state protocol (see paper linked below)
The unsteady protocols are a bit tricker to interpret, since there can be capillary end effects as well as dynamic effects, so just be aware of this.
For the negative relative permeability values, the sign was flipped based on the way the dir_z was being set in analysis/Subphase.csv for cases where unsteady flow occurs. This should be resolved based on commit 1b7ba03 . This edit changes the default behavior so that the sign of the flow orientation normal vector will match the flow direction based on the total mass flux.
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ahmedsrizk95
commented on August 20, 2024
Can you tell which number of BC is the steady, and what about other numbers?
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JamesEMcClure
commented on August 20, 2024
For steady-state you should set a periodic boundary condition with BC = 0 and drive the flow with an external body force
The other boundary conditions that are used the most are
BC = 3constant pressure boundary condition (specify inlet densitydinand outlet densitydoutBC = 4constant volumetric flux boundary condition (specifyfluxas the volumetric flow rate in voxels / timestep)
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ahmedsrizk95
commented on August 20, 2024
So have the boundary conditions in morphological initial conditions to be the same as the one will be used in the subsequent steady state or unsteady state process?
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JamesEMcClure
commented on August 20, 2024
The output of the morphological step is an 8-bit image, so it can be read into the simulators in like any other image. You can specify different boundary conditions if you want, but you do not have to. If you are doing history labeling, it is useful to apply boundary layers prior to the morphological step so that the history labels extend into the mixing layers. This is really only important if you are using periodic BC / fractional flow simulations.
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ahmedsrizk95
commented on August 20, 2024
Thanks very much.
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Related Issues (20)
- Add PCRI functionality
- Problem with building LBPM HOT 7
- morph drain saturation list
- Support for AMD GPU
- Fix abs perm calculation HOT 1
- 404 Not Found on wget commands; invalid reference format: repository name must be lowercase in singularity commands HOT 2
- [Enhancement] Introduction of SYCL backend HOT 3
- Instructions to build GPU-aware MPI HOT 1
- Hi, does LBPM need Silo? HOT 2
- Overloading issue HOT 6
- Endless overshoot/undershoot Capillary number using Fractional Flow Protocol HOT 11
- Building LBPM on TACC Lonestar 6
- Pressure Unit Conversion
- How to do imaging with the result of lbpm_color_simulator input.db HOT 1
- LBPM_Installation Error with cmake of LBPM BUILD HOT 13
- Update input files for bubble test
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