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airflow

Apache Airflow - A platform to programmatically author, schedule, and monitor workflows

airflow_multi_dagrun

triggering a DAG run multiple times

aws-eda-workshops

Samples and documentation for deploying EDA computing environments in AWS

aws-hpc-setup

aws-workshop-for-kubernetes

AWS Workshop for Kubernetes

bio-containers

Bioinformatics containers

bonito

A PyTorch Basecaller for Oxford Nanopore Reads

chat-ui

Open source codebase powering the HuggingChat app

ciriquant

circular RNA quantification tools

dash-sample-apps

Apps hosted in the Dash Gallery

deep-histopath

A deep learning approach to predicting breast tumor proliferation scores for the TUPAC16 challenge

deep-learning-with-python-notebooks

Jupyter notebooks for the code samples of the book "Deep Learning with Python"

deep-visualization-toolbox

DeepVis Toolbox

diffexpr

Porting DESeq2 and DEXSeq into python via rpy2

dorado

A LibTorch Basecaller for Oxford Nanopore Reads

ensembl-analysis

Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines

ensembl-annotation

The Ensembl gene annotation pipeline (a work in progress)

ensembl-hive

EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource

ensemblprojects

A collection of in-depth descriptions for Ensembl Google Summer of Code projects

genetics-backend

QC, spin VMs, load data into DBs, create LUTs and other fun backend stuff we need to do to spin https://genetics.opentargets.org

genomics-secondary-analysis-using-aws-step-functions-and-aws-batch

This solution provides a framework for Next Generation Sequencing (NGS) genomics secondary-analysis pipelines using AWS Step Functions and AWS Batch.

genoverse

HTML5 scrollable genome browser

gtex-pipeline

GTEx & TOPMed data production and analysis pipelines

hail

Cloud-native genomic dataframes and batch computing

histcnn

A set of codes to classify H&E slides using deep learning

igv-reports

Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.

igv.js

Embeddable genomic visualization component based on the Integrative Genomics Viewer

lluminous

mesonet

nd0821-c2-build-model-workflow-starter

Starter Code for the Course 2 project of the Udacity ML DevOps Nanodegree Program