osamashiraz Goto Github PK
Name: Osama Shiraz Shah
Type: User
Bio: Breast Cancer Researcher - interested in answering clinically relevant questions using genomic analysis
Twitter: OsamaShirazShah
Location: Pittsburgh
Name: Osama Shiraz Shah
Type: User
Bio: Breast Cancer Researcher - interested in answering clinically relevant questions using genomic analysis
Twitter: OsamaShirazShah
Location: Pittsburgh
The index files for sequence and other data created for the 1000 Genomes project and the International Genome Sample Resource
An Attractor Landscape Analysis Toolbox for Cell Fate Discovery and Reprogramming
A curated list of awesome Bioinformatics libraries and software.
A list of web-based interactive biological data visualizations.
A list of interesting genome browser or genome-browser-like implementations
List of software packages for multi-omics analysis
A list of useful bioinformatics resources
A continually expanding collection of cancer genomics notes and data
This repository is an exploratory resource to accelerate opensource analysis of CosMx™ Spatial Molecular Imager (SMI) data. Contained here are and writeups and vignettes addressing a variety of topics discussed when analyzing single-cell spatial data.
Deconvolution of Bulk RNAseq
Unix, R and python tools for genomics and data science
Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
Various algorithms for analysing genomics data
Reproduce figures from doi:10.1001/jamaoncol.2016.5630, Intrinsic Subtype Switching and Acquired ERBB2/HER2 Amplifications and Mutations in Breast Cancer Brain Metastases, Adrian Lee Lab
Learn regex the easy way
Source code and gene signature data files for miRNA and hallmarks of cancer paper
Annotates variants in MAF with OncoKB annotation.
Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially expressed genes. PowsimR is a flexible tool to simulate and evaluate differential expression from bulk and especially single-cell RNA-seq data making it suitable for a priori and posterior power analyses.
Analysis of Turkish BC samples after sequencing with Mammaseq
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.