Comments (5)
RightCake1
commented on May 24, 2024
Sorry i might have added the wrong label
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oschwengers
commented on May 24, 2024
Hi @RightCake1 , I'm sorry for this very late reply. I hope you've somehow solved this, already. Just in case, you have a white space in the path that you've provided as --db parameter at .../New Volume/.... This is not possible on UNIX systems as this will be interpreted as 2 distinct parameters. Either you quote the white space or (and this is highly recommended) you do not use paths with white spaces.
Best regards
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RightCake1
commented on May 24, 2024
Yes i was able to solve the issue by reinstalling it in an environment. But Thank you for the solution as I'll be trying it the way you recommended. Best regards!
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RightCake1
commented on May 24, 2024
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oschwengers
commented on May 24, 2024
Glad you could solve this, so I'll close this for now. Please, do not hesitate to re-open it in any case.
Best regards!
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Related Issues (20)
- ERROR: database file (orit.nhr) not readable! HOT 2
- Running multiple samples HOT 2
- Interpretation of results HOT 1
- Platon is Time-Intensive HOT 4
- Blast contig results HOT 7
- Permission denied: 'prodigal' HOT 1
- The number of contigs in plasmid.fasta is not the same as the number of contigs in .tsv HOT 3
- Differences between .log and plasmid.fasta file HOT 3
- --meta missing HOT 2
- RDS is always 0.0 HOT 7
- Trouble testing on chromosomes HOT 9
- Platon report Mobilization and Conjugation HOT 2
- IndexError: list index out of range error HOT 1
- Where can we find version of the RefSeq plasmid database used? HOT 1
- Strange output - is it normal? HOT 2
- Any plans for enabling user to use custom database like COMPASS HOT 1
- Option to see the 'hits' in the results HOT 1
- execution problem HOT 3
- diamond version HOT 2
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