oxpeter Goto Github PK

2017-11-15-wcm

bioinformatics_by_jove

Demonstration of library bioinformatics and jupyter notebooks

broodswap

Time course analysis of transitions between reproductive and brood care phases in the clonal raider ant, Ooceraea biroi

cerapachys_gff

GFF file for the Clonal Raider Ant (Cerapachys biroi)

covidskills

A django app that can match people to projects, based on a common skills inventory.

crossfilter

Fast n-dimensional filtering and grouping of records.

data_core_manager

A django app for managing infrastructure, projects and users of an institutional data core

dbug

notes and materials from dbug meetings

demoextension

Jupytercon extension workshop

django-blastplus

simple django app for blast search

django-gencal

A template tag for building calendars

flybase_miner

A text mining app for Drosophila genes

genomepy

A set of python modules for interacting with your local genome data, ncbi, and the Tuxedo suite

goenrich

GO enrichment with python -- pandas meets networkx

goncalo2019

hicluster

hierarchical clustering, PCA, RNA-seq distribution and heatmap rendering

htseq

HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.

htseq-transcriptome

htseq script to count reads multiply mapping to a transcriptome assembly

jupyter_module_test

testing the setting of the jupyter mybinder envirtonment

library_bioinformatics_service

This repository contains the workshop materials and tutorials run by the Library Bioinformatics Service at the Weill Cornell Medicine Samuel J. Wood Library.

mlanet18_twitter

A jupyter notebook showing how I created the graphics of the twitter discussion at MLA'18

mlanet19

notebooks and output of the twitter analysis for MLA '19 in Chicago

newick.js

JavaScript Newick format parser

ooceraea_inotocin_expression

Gene expression analysis provided as supplementary data for Fetter et al. (2021)

ortholotree

Search and evaluate gene orthologs using hmm and phylogeny

oxpeter.github.io

pretty_graphs

various matplotlib graph functions to help visualise data

python-ecology-lesson

:page_with_curl: Data Carpentry Python lessons on ecology.

python_template

a basic template that will provide useful functionality for the majority of my quick python scripts

rnaseqlib

RNA-Seq pipeline