Comments (2)
armintoepfer
commented on June 6, 2024
Could it be that your reference fasta file is not valid? The error message
assert (header_[0] == ">" and header_[-1] == "\n")
tells that there is a line starting with > but is not followed by another line with sequence data.
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rorycraig337
commented on June 6, 2024
Thanks for clarifying the error message, I had a bug in my script that was manipulating the Pilon output that was occasionally duplicating a new line, I should've caught that. Arrow is now working with my file, thanks again.
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