Comments (2)
If I use the unfiltered pigeon classification file, edited the Rscript number of arguments and applied sed "s/within_cage_peak/within_CAGE_peak/g
then the script ran fine producing PDF and HTML.
I am wondering why applying the *lite_classification.txt still fails with the error above.
Also, the main script requires change in the number of arguments and reflect the latest release with uppercase "CAGE"
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Please report to the appropriate repository. We don't maintain SQANTI3
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Related Issues (20)
- Cannot download Iso-Seq example data HOT 2
- filter HOT 1
- Lima failing to detect CCS data after Skera de-concatination & Bam2Fastq conversion HOT 1
- pigeon classification doesn't work (Chinese Hamster) HOT 5
- Segmentation fault (core dumped) when installing ilma. HOT 1
- isoseq correct is very sensitive for style of input HOT 1
- Isoseq3 cluster2 exits without error message HOT 2
- isoseq3 collapse stops with fatal error map::at HOT 3
- Generate HiFi reads HOT 1
- iso-seq reads and pbfusion HOT 2
- identify transcripts with polyA tails HOT 1
- IsoPhase on MAS-Iso-seq data for haplotyping HOT 2
- isoseq for scRNA: duplicate molecules are kept HOT 1
- isoseq for scRNA: UMI with homopolymers are not removed HOT 1
- What can I do only with .fastq reads? HOT 1
- isoseq groupdedup for variant analysis HOT 1
- lima not outputting enough ZMWs - issue with primers or primer choice? HOT 1
- What's the difference of = and X cigar of pbmm2? HOT 3
- PBSV system requirements HOT 3
- Iso-Seq Pigeon classify GTF error HOT 1
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