Comments (3)
jrharting
commented on September 26, 2024
1
make sure to use the grch38_notalts ref. here is a link:
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/001/405/GCA_000001405.15_GRCh38/seqs_for_alignment_pipelines.ucsc_ids/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna.gz
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jrharting
commented on September 26, 2024
Hi! This looks like a fetch error in htslib -- are you able to view the bam files in igv and view the data at HLA-a/b/c? I would def be interested in checking these data out if you can share. My email is [email protected]. Thank you!
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jrharting
commented on September 26, 2024
incorrect reference
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