Comments (3)
For now we can just do a loop in a range
def nodes:
nodeId = og.min_node_id
maxNodeId = og.max_node_id
while (nodeId <= maxNodeId):
if(og.has_node(nodeId):
yield og.get_node(nodeId)
nodeId+1
But this will cost in efficiency and long run needs to be fixed.
from spodgi.
This approach works for node handles. Unfortunately it will not work for path_handle
s. As there is no easy way to get a set of path_handle
s. This either means loading a set of them on open, or figuring out how to do this.
from spodgi.
I opened an issue at libhandlegraph
from spodgi.
Related Issues (14)
- Make this Conda, pip install etc. friendly HOT 1
- odgi_to_rdf misleading error message when 2nd argument is missing
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- SPARQL endpoint over http? HOT 2
- Docker images HOT 1
- If path names have real IRI's then the "IRI denotes a path' hack does not work. HOT 2
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- Integrate ODGI as a submodule into the repository? HOT 10
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from spodgi.