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allelicimbalance

aseofbases

Allele Specific Expression method and pipeline for analysis

branch_test

dimensioncompatibilitysolver

some code for a future package that investigates dimensions, and also check if multiple objects are, or make them compatible with each other. Compatible means here common and or matched dimnames dimnames

duplicate_id_resolver

characterize and manipulate duplicate IDs in VCFs

exampledata

gctb-source

gh-pages-example

Example for gh-pages lesson.

gwas

A pipeline for Genome Wide Association Studies

gwas_simulate_sumstats

introduction

largefilesshiny

Large File Integration Shiny

merging_imputed_genotypes

merging ipsych imputed genotypes

r-stats-c-streamer

replace_rsid_in_qcfiles

A specific wokflow to replace rsids in a set of qcfiles

s-pcgc-workflow

An attempt to run s-pcgc from scratch using 1000 Genomes data

sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

snippets_c

short pieces of c code

test-datasets

Test data to be used for automated testing with the nf-core pipelines

traverselist

A collection of code for traversing lists

vcf_reference_build_tools

A tool to update or add reference build information such as position, rsid, etc

vectorizationexamples

How to get rid of for loops

word-count

Example project we use in the reproducibility lesson.