pariswu1988 Goto Github PK
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pariswu1988's Projects
2016-10-rbioc-prot-stellenbosch
Material for R/Bioconductor Proteomics Workshop at Stellenbosch University, October 2016
asja
ASJA: a program for Assembling Splice Junctions Analysis
beautiful-visualization-with-r
《R语言数据可视化之美》配套代码
bioinformatics
Coursera code challanges
compareip2
compare two csv dataset from Integrated Proteomics Pipeline
cross-link
An open source software for identifying cross-linked peptide from fragment ion spectra
cyclobranch
An open-source, cross-platform and stand-alone tool for mass spectrometry data analysis.
cyclopeptide-sequencing
The development of a novel cyclopeptide sequencing algorithm
cyclopeptidesequencing
Python implementation of sequencing a peptide based on mass spectrum reading
deuteros_2.0
Deuteros 2.0 Repository
ecl
A fast and exhaustive cross-linked peptides identification tool.
eggnog-mapper
Fast genome-wide functional annotation through orthology assignment
imputation
R package for data imputation. Fills missing values in a numeric matrix
imputer
CRAN R package: Impute missing values based on automated variable selection
labdocs
Roberts Lab Documents
lip-ms_demo
Demo package with PERL scripts to map LiP-MS peptides on protein structures.
msproteomicstools
Some hopefully useful tools for mass spectrometry applied to proteomics
pacom
PACOM (Proteomics Assay COMparator) is a Java stand alone tool for visualize and compare large proteomics datasets
padua
Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)
peptide-shaker
Interpretation of proteomics identification results
proteomics
:exclamation: This is a read-only mirror of the CRAN R package repository. proteomics — Statistical Analysis of High Throughput Proteomics Data. Homepage: http://00tau.github.io/proteomics-in-r/
quantitative-proteomics-and-data-analysis
Material Quantitative Proteomics and Data Analysis Course
skbr3b_exosome_proteome
Analysis from a proteomics study of exosomes published in Analytical Chemistry
statistics-primer
Statistics primer
teachingmaterial
Various teaching material
tidyverse-missranger-limma
using 3 R package perform proteomics result analysis from MQ
tiedie
Tied Diffusion for Subnetwork Discovery (TieDIE)
trinityrnaseq
Trinity RNA-Seq de novo transcriptome assembly
unidec
Universal Deconvolution of Mass and Ion Mobility Spectra
xifdr
Generic FDR-Calculation for cross-linked PSMs and resulting peptide pairs, links and protein pairs
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