Comments (5)
Hi,
Thanks for trying out our package. The refit module can be accessed through musical.refit
, and the refit function within that module can be called with musical.refit.refit()
, as was used in the refitting example. Perhaps that solves the issue?
from musical.
Hello, thank you for the prompt response.
It looks like the package doesn't install correctly, because __init__.py
under the installation directory didn't have refit
under __all__
, so I was getting AttributeError: module 'musical' has no attribute 'refit'
. I added refit manually, and it works.
Also, the catalog data doesn't get copied either, so musical.load_catalog()
didn't find the .csv
files. I copied them manually and it works.
Thank you.
from musical.
Hi, the catalog issue is resolved in #71. If you uninstall, clone the most updated repo, and install again, it should work. Apologies for that.
I don't fully understand the refit issue though. Maybe I'm missing something, but in __init__.py
, the module musical.refit
is referred to, which means that all functions within musical.refit
, including musical.refit.refit()
is callable. Could you send the code that you are running which can reproduce the error? Thanks.
from musical.
I reinstalled, and both the catalog and the refit module work now.
Thank you for a great tool!
from musical.
Sounds good. Glad it's resolved with the reinstallation.
from musical.
Related Issues (20)
- Check silhouette score definition for corner cases HOT 1
- Update simulate_count_matrix using np.random.multinomial HOT 1
- Keep track of sample names
- Make sure everything works for n_components = 1 HOT 1
- Inconsistency of using KL divergence with NNLS HOT 1
- Add a comment on n_replicates
- Output of beta_divergence when beta = 1 can be negative sometimes
- Update mannwhitneyu such that it does not throw an error when the two arrays are identical and contains a single value
- Improve fcluster or cut_tree in hierarchical clustering
- Improve the structure of DenovoSig
- Update the default of load_catalog()
- Improve matching and refitting for samples with large errors
- ModuleNotFoundError: No module named 'musical.denovo' HOT 1
- Challenges with Model Validation HOT 9
- Small bug in remove_samples_based_on_gini? HOT 2
- Rstudio Version request HOT 1
- Cannot load catalogs HOT 2
- De novo signature discovery - very slow HOT 2
- Cohort Stratification Error HOT 2
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from musical.