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3d_print_designs

amasine

ara_tools

Analysis of mouse brain STP data with respect to the Allen Reference Atlas

archcontainer

Arch Linux container with GUI support.

autolfads-tf2

A TensorFlow 2.0 implementation of Latent Factor Analysis via Dynamical Systems (LFADS) and AutoLFADS.

bombcell

Automated manual curation and cell classification of spike-sorted electrophysiology data in MATLAB. Fine-tuned for kilosorted Neuropixels data.

bonsai

The compiler, IDE, and standard library for the Bonsai visual programming language for reactive systems

bpod_gen2

Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)

bpodprotocols_olf2afc

Olfactory discrimination 2AFC task.

cbrewer2

Cynthia Brewer's Color Brewer colormap palettes, ported to MATLAB, with nice interpolation.

cellbase

Matlab-based data base and analysis functions for neural recordings.

cellexplorer

CellExplorer is a graphical user interface (GUI) and standardized pipeline for exploring and characterizing single cells acquired with extracellular electrodes

chaosbox

A framework for generative art.

chronic-neuropixels-protocol

Repo requested by Cagatay Aydin (for a paper)

chronic_neuropixels

Repository of code, data and CAD files associated with Luo*, Bondy* et al (2020). "An approach for long-term, multi-probe Neuropixels recordings in unrestrained rats"

chronicneuropixels

Neuropixels case for chronic recordings in freely moving mice.

crabsort

🦀🦀🦀 Sort spikes from extra-cellular recordings using neural networks. Fully automated.

dabest-matlab

MATLAB package to generate contrast plots

datahigh

DataHigh: A graphical user interface for visualizing and interacting with high-dimensional neural activity

datajoint-matlab

Relational data pipelines for the science lab

datajoint-tutorials

Getting started materials for DataJoint - with Calcium Imaging, Electrophysiology, Machine Learning examples

density_estimation

density_estimation

docker-transmission

docker-transmission-filebot

add filebot cli to transmission docker container

dpca

An implementation of demixed Principal Component Analysis (a supervised linear dimensionality reduction technique)

eeglab

EEGLAB is an open source signal processing environment for electrophysiological signals running on Matlab and developed at the SCCN/UCSD

eraasr

ERAASR: An algorithm for removing electrical stimulation artifacts from multielectrode array recordings

export_fig

A MATLAB toolbox for exporting publication quality figures

gramm

Gramm is a complete data visualization toolbox for Matlab. It provides an easy to use and high-level interface to produce publication-quality plots of complex data with varied statistical visualizations. Gramm is inspired by R's ggplot2 library.

hctsa

Highly comparative time-series analysis