paveleg Goto Github PK

ana-maria-lab-improved

analisismetilacion_omaya

anamarialab.github.io

appliedgenomics2018

Materials for Spring 2018 Applied Genomics Course

bioinformatica

bioinformatics-one-liners

Bioinformatics one liners from Ming Tang

bioinformatics-training-collection

A collection of resources for learning about tools and languages related to Bioinformatics

braker

BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

cactus

Official home of genome aligner based upon notion of Cactus graphs

de-bruijn-graph-genome-visualization

Builds de Bruijn graph from genome reads and visualizes in browser using vis.js

diamond

Accelerated BLAST compatible local sequence aligner.

e-mtab-6141

Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.

fcs

Foreign Contamination Screening caller scripts and documentation

flye

De novo assembler for single molecule sequencing reads using repeat graphs

genomicafuncionallab

Repositorio para la pagina del Laboratorio de Genomica Funcional de CICESE

genomicafuncionaltest

getting-started-with-genomics-tools-and-resources

Unix, R and python tools for genomics and data science

gtseq-pipeline

A series of perl and python scripts for generating genotypes from NGS fastq files from GTseq library sequencing.

gwas_gcta

improved-genome-assembly-of-the-whiteleg-shrimp-penaeus-litopenaeus-vannamei

Improved genome assembly of the whiteleg shrimp Penaeus (Litopenaeus) vannamei using long- and short-read sequences from public databases

integrity

my.perl.scripts

A collection of my perl scripts that I usually use for transcriptomics analysis purposes

ngenomesyn

Any Way to Show Multi genomic Synteny

normqpcr

Analyse qPCR data including selection of optimal reference gene(s) and normalisation

pavelgalindo.github.io

pema

PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes

programming-books

Books on programming and computer science

reffreedma

Reference Genome Independent Differential DNA Methylation Analysis

rnaseq2024

scidataflow