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arrow2

Unofficial transmute-free Rust library to work with the Arrow format

behaviour

ca-analysis-bloodflow

chips

CHIPS, or Cellular and Hemodynamic Image Processing Suite, is an open-source MATLAB toolbox designed to analyse functional images of cells and blood vessels, primarily from two-photon microscopy. Please see the README file, which is displayed at the bottom of this page, for more information.

cvm

Continuous Volumetric Microscopy

dff-calc

Calculate dF/F for neural traces, based on https://www.nature.com/articles/nprot.2010.169

dm_optimization

Optimize laser wavefront using Alpao's DM69

ep-analysis

Analyze the outputs of the EP algorithm

eran-hagai-project

magicgui

build GUIs from python functions, using magic.

nalgebra-numpy

Convert between nalgebra and numpy types.

napari

napari: a fast, interactive, multi-dimensional image viewer for python

napari-tutorials

tutorials for the napari image viewer

neural_collision_detection

Collide vasculature and neurons for fun and profit (?)

python-gsheet

Read and write data from Google Sheets

python-pysight

Create images and volumes from photon lists generated by a multiscaler

rpysight

Real-time 2D/3D rendering of photon streams from a TimeTagger

vispy

Main repository for Vispy

wideflow

Live analysis of propagating waves in wide field imaging