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digital_slide_archive

The official deployment of the Digital Slide Archive and HistomicsTK.

geotiff.js

geotiff.js is a small library to parse TIFF files for visualization or analysis. It is written in pure JavaScript, and is usable in both the browser and node.js applications.

geotifftilesource

Implementation of a TileSource for OpenSeadragon based on GeoTIFF.js, enabling local and remote TIFF files to be viewed without using an image server

histomicsui

A Girder plugin for pathology image annotations and analysis.

jscodonwheel

Interactive codon wheel visualization: maps codons onto amino acids.

jscomut

An interactive co-mutation plot generator, in-browser but fully client-side. Load a data file, play with the geometry of the chart, explore your data, and save an svg file.

jsproteinmapper

Interactively explore the relationship between a variant of interest, protein structure, and previously reported variants.

openseadragon

An open-source, web-based viewer for zoomable images, implemented in pure JavaScript.

openseadragon-site-build

Build script and documents for the OpenSeadragon site

openseadragonfiltering

OpenSeadragon filtering plugin

openslide

C library for reading virtual slide images

osd-paperjs-annotation

Annotation tools for Openseadragon

osd-social

osdautoregistration

An OpenSeadragon based viewer that leverages OpenCV Js to Register Two Images

paper.js

The Swiss Army Knife of Vector Graphics Scripting – Scriptographer ported to JavaScript and the browser, using HTML5 Canvas. Created by @lehni & @puckey

pearcetm.github.io

Github Pages Homepage

svs-deidentifier

Strip potentially identifying label and macro images from Aperio SVS whole slide image files

webscope-to-openseadragon