pip install --user --upgrade https://github.com/pepkit/pepkit/archive/master.zip
pip install --user --upgrade https://github.com/pepkit/pepkit/archive/dev.zip
Name: Portable Encapsulated Projects
Type: Organization
Bio: Standardized sample metadata structure for biological research
Blog: https://pep.databio.org
Key-value mapping that supports nested attribute-style access
BiocProject provides a PEP-compatible R package for autoloading biological data
A web GUI for pipeline job submission and management
DIvvy computing configuration files.
Standardized computing resource configuration
Validator for PEP objects
Some simple examples of PEP-compatible projects
Builds a PEP from SRA or GEO accessions
Automatic uploader of GEO metadata to PEPhub.
A Hello World! example repository for looper
A job submitter for Portable Encapsulated Projects
Next-generation sequencing toolkit
Examples of how to use PEP to run pipelines with different workflow systems
Example simple and bioinformatic pipelines using PEPs and snakemake.
Convert PEP metadata into other formats
Database for storing sample metadata
Indexer of pephub database
A web API and database for biological sample metadata
Data stores for pephub PEPs
A tool to provide Python and CLI interface and Python API for PEPhub.
Static file generator for reading in a PEP storage URL and generating a static file structure to traverse and fetch relevant data on the PEP
Meta-package for all pepkit tools
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.