Comments (5)
Hi
Make sure to install the NWB Matlab toolset beforehand: https://github.com/NeurodataWithoutBorders/matnwb
Follow this tutorial to work with the nwb format: https://cellexplorer.org/tutorials/nwb-tutorial/
Let me know if this fixes your issue.
from cellexplorer.
thank you, I've added the toolset.
I intend to save a batch cell_metrics, and it now sends this error, that makes sense, the batch cell_metrics.general doesn't have the "basepath" field but basepaths...
cell_metrics.general.basename
ans =
'batch of sessions'
nwb_file = [cell_metrics.general.basename, '.cellmetrics.cellinfo.nwb'];
nwb = saveCellMetrics2nwb(cell_metrics, nwb_file);
Unrecognized field name "basepath".
Error in saveCellMetrics2nwb (line 22)
'session_description', cell_metrics.general.basepath, ...
should I save the cell_metrics for each session to nwb, one at a time?
from cellexplorer.
Hi. Sorry for not getting back to you sooner, but unfortunately, I can't troubleshoot from these copied lines. Could you share your dataset with me?
In general, I recommend saving the sessions individually, but saving a batch of sessions together is possible.
from cellexplorer.
Hi Peter,
No worries! I've sent you an email with my dataset. I'll try saving my sessions individually in the meantime.
Thanks!
from cellexplorer.
Hi
I closed the issue. Feel free to open it again.
from cellexplorer.
Related Issues (20)
- Unrecognized function or variable 'ydata' HOT 1
- Request for CCGHeart.mexmaca64 HOT 2
- Plotting averages of events HOT 3
- Issue in windows system HOT 4
- Some problems with the Generate Common Coordinates HOT 5
- oscillations in waveform HOT 2
- ProcessCellMetrics overwriting 'session' input HOT 2
- conflict between Kilosort3 and CellExplorer HOT 6
- Generalization for all sampling frequencies HOT 2
- manipulations with different timescale HOT 2
- Batch cell_metrics containing putative connection transmission probabilities HOT 2
- Hi Peter,Error loading waveforms HOT 10
- Saving cellMetrics to nwb HOT 3
- Mismatch between size of detection of connections and transmission probability matrix HOT 2
- Behavioral trials not yet supported HOT 4
- Large Refractory Period Violation Values HOT 2
- Fitting equation in fit_ACG.m? HOT 3
- Error using CellExplorer>@(X)X(1:end-2) Too many input arguments. HOT 1
- Problems Running CellExplorer HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from cellexplorer.