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Hi there šŸ‘‹

I use computers to learn how genomes work.

  • šŸ”­ Iā€™m currently working on interpretable ML around environmental DNA (eDNA) from Western Australia's oceans. Hopefully soon I will have models which tell me which WA ocean areas are healthy, which areas show more diversity than expected, and which ones need help!
  • šŸ‘Æ I'm always happy to chat anything interpretable ML, especially applied to sequencing data (genomes/reads)!
  • šŸ“« How to reach me: https://genomic.social/@philippbayer is probably fastest. if not, my Minderoo email is pbayerATminderooDOTorg
  • šŸ˜„ Pronouns: he/him
  • šŸ’¬ I regularly blog at https://philippbayer.github.io/blerg/
  • āš” Fun fact: most crops we rely on (bread wheat, canola, coffee, cotton, strawberry, etc.) are allopolyploids, that means that their cells contain a bunch of genomes from two or more ancestral species (canola: 2 genomes, bread wheat: 3 genomes). We humans have only one genome, boring.

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Philipp Bayer's Projects

arc_friend icon arc_friend

Takes a ORCID exported bibliography and puts it into a nice format for the ROPE section of an ARC application

atlas icon atlas

ATLAS - Three commands to start analyzing your metagenome data

bc icon bc

Template for Software Carpentry bootcamp site repository.

configs icon configs

Config files used to define parameters specific to compute environments at different Institutions

contigplacer icon contigplacer

A simple program to place unplaced contigs based on (Skim)GBS data.

cv icon cv

My curriculum vitae.

dotfiles icon dotfiles

Just a couple of dotfiles so I can git clone from work, take elements as needed :)

ecologymaps icon ecologymaps

Trying to map european open data to the map of europe using Rails

flatland-plots icon flatland-plots

Plotting the two-dimensional beings of Abbott's Flatland (1884).

goodreads_to_tumblr icon goodreads_to_tumblr

A script that parses your exported Goodreads reviews and uploads them to Tumblr's posting queue

homebrew-science icon homebrew-science

:beer::microscope: Scientific formulae for the Homebrew package manager

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