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Xiaoxi Du's Projects

amfinder icon amfinder

The Automatic Mycorrhiza Finder (AMFinder) allows for automatic computer vision-based identification and quantification of AM fungal colonisation and intraradical hyphal structures on ink-stained root images using convolutional neural networks.

bowtie icon bowtie

An ultrafast memory-efficient short read aligner

docx4j icon docx4j

JAXB-based Java library for Word docx, Powerpoint pptx, and Excel xlsx files

ibiosim icon ibiosim

iBioSim is a computer-aided design (CAD) tool aimed for the modeling, analysis, and design of genetic circuits. It is capable of importing and exporting models specified using the Systems Biology Markup Language (SBML). iBioSim also supports the Synthetic Biology Open Language (SBOL), an emerging standard for information exchange in synthetic biology.

kubegene icon kubegene

KubeGene - A turn-key Genome Sequencing workflow management framework

nextrnai icon nextrnai

nextrnai - a software package for the design of RNAi libraries

picrust2 icon picrust2

Code, unit tests, and tutorials for running PICRUSt2

psipred icon psipred

PSIPRED Protein Secondary Structure Predictor

ramf icon ramf

A package for arbuscular mycorrhyzal fungi colonization

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