Name: Plant and Food Research
Type: Organization
Bio: The New Zealand Institute for Plant and Food Research. Crown Research Institute. Contact Matthew Laurenson or Zane Gilmore for access.
Location: New Zealand
Blog: http://www.plantandfood.co.nz/
Plant and Food Research's Projects
Data analysis for a collaborative project with FAR aiming to improve wheat yields
Curated public data about genetic markers and mapping in onion and related Allium vegetables
Dockerfile and helper files to build Apsim Classic in a Docker container
Scripts for doing stuff pre and post apsim simulation
ApsimX is the next generation of APSIM
Aspire Asparagus Android app written by Alastair Hughes
collection of scripts and commands used by Ian Korf, Keith Bradnam, and Joe Fass in the analysis of Assemblathon 2 entries (assemblies)
simple jobs submission via command-line for AWS batch
RNAseq differential expression experiment in N. benthamiana and Vitis vinifera
Configuration and settings associated with PFR's CKAN instance
Start doing data science in minutes
The Leek group guide to data sharing
Copy of https://github.com/stj/django-import-export that works with django 1.8
Docker Compose setup for CKAN
Docker image for https://github.com/digitalocean/netbox
Plyr specialised for data frames: faster & with remote datastores
EDAM is an ontology of bioinformatics types of data including identifiers, data formats, operations and topics.
Example tetraploid VCF from NCBI BioProject PRJNA414303
Rainshelter rotation simulations
initial port of GBS scripts to makefiles
GenomeTools genome analysis system.
Scripts and tools to automate github
Gather, curate, and feature stories of public servants and civic hackers using GitHub as part of their open government innovations
Mask R-CNN for object detection and instance segmentation on Keras and TensorFlow
Package to create hidecan plots for GWAS and differential expression results
Middleware for your critical data.
Tools for visualising spacial simulation data