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Research Interests

  • Bioinformatics tool development
  • Genetic logic circuit in living cells
  • Laboratory automation

Publications

Selected articles

  1. Mori H, Yachie N. A framework to efficiently describe and share reproducible DNA materials and construction protocols. Nat Commun. 2022 May 24;13(1):2894. doi: 10.1038/s41467-022-30588-x. PMID: 35610233; PMCID: PMC9130275.
  2. Sakata RC†, Ishiguro S†, Mori H†, Tanaka M, Tatsuno K, Ueda H, Yamamoto S, Seki M, Masuyama N, Nishida K, Nishimasu H, Arakawa K, Kondo A, Nureki O, Tomita M, Aburatani H, Yachie N. Base editors for simultaneous introduction of C-to-T and A-to-G mutations. Nat Biotechnol. 2020 Jul;38(7):865-869. doi: 10.1038/s41587-020-0509-0. Epub 2020 Jun 2. PMID: 32483365. †These authors equally contributed to this work.
  3. Mori H, Evans-Yamamoto D, Ishiguro S, Tomita M, Yachie N. Fast and global detection of periodic sequence repeats in large genomic resources. Nucleic Acids Res. 2019 Jan 25;47(2):e8. doi: 10.1093/nar/gky890. PMID: 30304510; PMCID: PMC6344855.

Software tools

  1. QUEEN
  2. SPADE
  3. patchworklib
  4. pyCircos
  5. sangerseq_viewer

Hideto Mori's Projects

cls icon cls

A greedy distributed computing for gigantic lineage reconstruction

colabfold icon colabfold

Making Protein folding accessible to all via Google Colab!

ecellex icon ecellex

ecell3を拡張するためのスクリプト

flashpy icon flashpy

Fast python code to merge paired-end reads

markdown icon markdown

基本的なマークダウン記法のまとめ　中に書いてあるリンクを片っ端から試してまとめただけ。

nintaka icon nintaka

development of web based cell simulation

patchworklib icon patchworklib

Patchwork for matplotlib: A subplot manager for intuitive layouts in matplotlib, seaborn, and plotnine.

pysanger icon pysanger

A Python module to analyze Sanger sequencing results.

sangerseq_viewer icon sangerseq_viewer

sangerseq_viewer is a python package to automatically visualize Sanger sequencing results and the corresponding annotated sequence map.

wavelets icon wavelets

Python implementation of the wavelet analysis found in Torrence and Compo (1998)

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