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aws-iot-device-sdk-cpp

SDK for connecting to AWS IoT from a device using C++

aws-iot-device-sdk-embedded-c

SDK for connecting to AWS IoT from a device using embedded C.

bird-malaria-uce-phylo

c-wap

SC2 variant detection and composition pipeline

docker-builds

:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics

freyja

Depth-weighted De-Mixing

github-slideshow

A robot powered training repository :robot:

grfp

Here are a set of example Relevant Background and Future Goals and Graduate Research Plan Statement statements for the NSF GRFP in Ecology and Evolutionary Biology.

illumiprocessor

pre-process illumina reads

mcmcglmm

MCMCglmm analysis, bayesian, phylogenetic mixed effects models

ncov

Nextstrain build for novel coronavirus SARS-CoV-2

pango-designation

Repository for suggesting new lineages that should be added to the current scheme

pango_aliasor

Utility to alias and dealias pango lineages

phase_hybrid_from_next_gen

Have you got a hybrid in your ultra-conserved element dataset, and you want to confirm its parent species? Then boy, do I have the pipeline for you!

phd

A list of resources on how/why to do a PhD

phyluce

software for UCE (and general) phylogenomics

pigx_sarscov2_ww

PiGx SARS-CoV2 wastewater sequencing pipeline

postdoc_funding

A non-exhaustive list of postdoctoral funding opportunities.

sarscov2barcode

Assign clades to SarsCov2 samples

statements

Successful Job Applications and Grants

swga

Select primer sets for selective whole genome amplification (SWGA)

tldr

📚 Collaborative cheatsheets for console commands

variant_definitions

wastewater-covidseq

Wastewater sequencing data analysis

wastewater_viral_enrichment

Viral metagenomics of wastewater samples

wastewater_viromics_sarscov2

wastewatervariantcalling