Comments (7)
I'm sorry it took so long to reply. You can close the bug now!
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The sysout that outputs the Spectrum ID value can be located here, which I understand is out of scope for ms-data-core-api.
Also, can you build the source code from release 2.0.5? For me maven informs that it fails under two tests:
Failed tests:
MzIdentMLIgnoreProteinInferenceTest.testGetIdentificationIDs:126 The id of the first identification should be PDH_psu|NC_LIV_020800_0 expected:<DBSeq_1_[psu|NC_LIV_10274]0> but was:<DBSeq_1_[Rnd1psu|NC_LIV_14506]0>
MzTabControllerImplTest.testProteinIdentification:72 The first protein has
Tests run: 98, Failures: 2, Errors: 0, Skipped: 0
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I updated that in the current version. Can you check the current version. I also update the some of the dependencies including jmzTab. I don't think I can go back to version 2.0.5. But I will be more that happy to support you and help you the deploy this version 2.0.8.
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I can’t look into it right now but I’ll check the updated version as soon as I get some time. Thank you so much for your support, I’ll keep you updated if anything goes wrong!
Natan Streppel
On Aug 3, 2016, at 12:03 PM, Yasset Perez-Riverol [email protected] wrote:
I updated that in the current version. Can you check the current version. I also update the some of the dependencies including jmzTab. I don't think I can go back to version 2.0.5. But I will be more that happy to support you and help you the deploy this version 2.0.8.
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Please do it. I will leave open this issue until you have a look.!!!
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Also, feel free to contribute, just make a pull-request and I will integrate your changes.
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Are you using the library? We would like to have a list of software that is using the library.
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Related Issues (20)
- CachedDataAccessController.getSpectrumPrecursorCharge(Comparable specId) returns null
- Compress existing mzml file? HOT 2
- Travis is failing HOT 1
- Parsing of some assays seems to hang HOT 2
- Failing CI build on Travis HOT 2
- Issue with massive dataset
- The EBI repo is down? HOT 4
- README needs further review HOT 1
- Scanlists and precursors are null
- Question about method MzIdentMLUtils.getSpectrumId HOT 4
- Using this API in MATLAB HOT 1
- issue reported by Massive team HOT 3
- optimise for validation of mzIdentML file HOT 1
- Auto Detect MzIdentML 1.2 file
- Return the Modifications identified HOT 1
- Validation of new PRIDE Result files should happen in this ms-data-core-api
- Validating the submissions with rules related with the conversion process to mzTab
- Standardising the the modifications to UNIMOD HOT 1
- Review The following methods: HOT 1
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