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adeeti_code

All of Adeeti's code for her projects

arfit

autoregressive modeling using the ARfit package

caiman

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

clearmap2

ClearMap 2.0 with WobblyStitcher, TubeMap and CellMap

connor_random

Random code from the one, the only ME!

diego_code

Diego's code / useful functions for work in the ProektLab

ethan_misc

Ethan's miscellaneous Matlab utilities

generalutils.jl

group_code

jennifer_code

local-linear-segmentation

This repository contains the main scripts for local linear segmentation and subsequent analysis of the resulting model space

looper

Maintained version of LOOPER

looper-paper

Code for LOOPER publication

mesmerize-core

High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn

mousevr

Harvey Lab miniaturized mouse VR rig for virtual navigation and decision-making tasks

navigation

neuropatttoolbox-1

MATLAB toolbox to automatically detect, analyze and visualize spatiotemporal patterns in neural population activity, developed by Dr. Pulin Gong's group at University of Sydney

nonnegativematrixfactorization

pbupsmodel.jl

spec-state-trans

Investigating spectral state transitions in anesthetized rodent LFP.

spectralanalysis

spectral analysis tools due to Drew Hudson

spi_mouse_control

Code for communicating with ADNS3080 chip on MX18 mouse using Teensy 3.1

ssm

Bayesian learning and inference for state space models

stats

Useful Statistical Tests and Circular Statistics due to Drew Hudson

stereoeeg

Repository to house code for a collaborative project analyzing stereoEEG data during anesthesia induction and sleep

waveanalysis

matlab routines used to analyze spatiotemporal waves in neurophysiological recordinds