projectoriented Goto Github PK

advent-of-code

anomaly

A pipeline to detect aberrant RNA events for clinical diagnostics in rare disease

ava_svbyeye

awesome-bioinformatics

A curated list of awesome Bioinformatics libraries and software.

back-reference-qc

Detect outlier long-reads by using its Illumina counterpart.

bio-utils

A place where I keep scripts until I have enough to develop them into tools

configs

Config files used to define parameters specific to compute environments at different Institutions

containers

A place where I hold container definition files.

contiguous-x

Attempt to build contiguous X with long reads

continuous-methylation

A Snakemake pipeline for methylation analysis using long-read sequencing (third generation).

cyclic-di-gmp

test out various statistical methods to identify snps associated with cyclic-di-gmp

diff-borr-group

Query database to find difference between borrelia groups

dotfiles

A place to setup personal OS settings 🤖

drop

Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

dss-test

A place to hold all the testing ideas for finding differential methylation regions

fix-sex-chrom

Ad-hoc solution to re-align sex chromosomes in male dual assemblies

flagger-smk

A Snakemake copy of WDL Flagger

foxy-fusarium

Research Training, VT2020 course at Uppsala University. Bioinformatics, MSc

genome-analysis

Genome Analysis, VT2020 course at Uppsala University. Bioinformatics, MSc.

hifiadapterfilt

Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).

hugo-theme-cactus

Cactus theme for hugo

ldsa

A repository for Large Dataset Scientific Applications class at UU in the VT-2020 term. It's a class where we learn to utilize cloud-based applications and tools for scientific computing.

ldsa_project_team-4

Large Datasets for Scientific Applications, VT2020 course at Uppsala University. Bioinformatics, MSc

methylink

CLI tool to link methylation tags between two files

minimiro

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

ont_pipelines

projectoriented.github.io

:building_construction: Personal website

raredisease_rna_workflow

rosalind-problems

A place to collaboratively solve rosalind problems