Assigning individuals from a CSV file to an ontology in Protégé about protege

[jamesaoverton]

If you are comfortable with command-line tools, you might consider ROBOT and specifically the robot template command. ROBOT is built on the same OWLAPI library as Protégé and designed to be completely compatible.

[gouttegd]

Your best shot is probably the Cellfie plugin, which accepts an Excel spreadsheet (and only that apparently, not CSV/TSV files) and allows you to create arbitrary axioms (including definitions of individuals) from its contents using MappingMaster rules.

The plugin is bundled with the default distribution of Protégé and is available through Tools > Create axioms from Excel workbook.

I have never used it though, so I can’t be of any more help.

[Haythamyounus]

Thanks for your reply. However, I am more comfortable doing it with Protege as already released a paper with the same tools. so i