pughlab Goto Github PK
Name: Pugh Lab
Type: Organization
Bio: The Pugh Laboratory at the Princess Margaret Cancer Centre
Location: Toronto, Ontario, Canada
Blog: http://pughlab.org
Name: Pugh Lab
Type: Organization
Bio: The Pugh Laboratory at the Princess Margaret Cancer Centre
Location: Toronto, Ontario, Canada
Blog: http://pughlab.org
R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al. (https://doi.org/10.1038/s41467-020-14286-0)
convert bam to bedpe format
Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets
This repository contains custom code used for analysis in El Ghamrasni et al.,
Computational analysis for BRAF-mutant melanoma rapid autopsy project
Code for scRNAseq analysis in Restall et al., Cancer Research, 2020
A comparison of data integration methods for single-cell RNA sequencing of cancer samples
scripts used for auto importing new datasets into the cBioPortal database; live
cBioPortal for Cancer Genomics
Stuff to help deploy cBioPortal with ansible
React Frontend of cBioPortal :tada:
python package to load cancer genomics data sets into the cbioportal database; not live
The OCTANE branding for cBioPortal, as a war overlay
Generate, manage and edit data and metadata files suitable for the import in cBioPortal for Cancer Genomics.
Tool to help cbioportal study owners to organize their studies for publishing to cbioportal
Post-processing pipeline for next-generation circulating methylome data generated by cfMeDIP-seq
Pre-processing pipeline to transform MEDIPS output wig files into matrix of chromosomal bins by samples
CNAqc - Copy Number Alteration (CNA) Quality Check package
ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to amalgamate reads derived from the same DNA template into a consensus sequence.
The CanceR Single Cell ExpressioN Toolkit one-line-command applications.
CReSCENT Portal: https://crescent.cloud | CReSCENT Docs: https://pughlab.github.io/crescent-frontend/
CTIMS project
CTIMS Github Pages
Script to convert from VCF files to MAF files ready to be imported into cBioPortal
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.