pyspider Goto Github PK

alphafold

Open source code for AlphaFold.

beetle-climate

The raw data and code for the paper about beetle phylogenetic diversity in Gaoligongshan (GLGS)

bioinformatics-training

Bioinformatics training resources

bootstrap-jplace

A shell script that will create an iTOL dataset of bootstrap symbols/labels to annotate a jplace tree created using the RAxML EPA algorithm.

brms

brms R package for Bayesian generalized multivariate non-linear multilevel models using Stan

colabfold

Making Protein folding accessible to all!

daee

daee - Data Analysis for Ecology and Evolution

ecopart

R script for partitioning the temporal changes in beta diversity

gotranseq

convert nucleic sequence in protein sequence

hacsim.r

Iterative extrapolation of species haplotype accumulation curves for genetic diversity assessment.

hmsc

icamp1

Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)

ictv-mmseqs2-protein-database

inext.3d

Interpolation and Extrapolation in three dimensions

inext3d

This is a package for three class diversity.

jamp

JAMP - Just Another Metabarcoding Pipeline

libpll

Phylogenetic Likelihood Library

locblast

Local NCBI BLAST+ Search

mdr_s-map

A novel method proposed to reconstruct high-dimensional interaction Jacobian network

metacoder

Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data

minibarcoder

DNA barcoding using MinION

mmseqs2

MMseqs2: ultra fast and sensitive search and clustering suite

naptime

NAPtime: the NGS Amplicon Pipeline, perl wrapper scripts for amplicon barcoding and metabarcoding

pll-modules

High Level modules for the Low Level Phylogenetic Likelihood Library

pplacer

Phylogenetic placement and downstream analysis

proteomicsvisualization

This is a collection of minimal code to visualize various aspects of proteomics data.

qgis

QGIS is a free, open source, cross platform (lin/win/mac) geographical information system (GIS)

rappas

Rapid, Alignment-free, Phylogenetic Placement via Ancestral Sequences

rasp

RASP 4

rematch

Reads mapping against target sequences, checking mapping and consensus sequences production