qihaowei89 Goto Github PK

amp_phase1_ra

:ear_of_rice: Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.

amp_phase1_ra_viewer

🌻 View single-cell RNA-seq and mass cytometry data in synovial tissues from patients with RA or OA.

benchmarking-tools

Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls

bioinfotools

Documenting usage and experience with bioinformatic tools

chemical_medicine

cnv

cnvkit

Copy number variant detection from targeted DNA sequencing

crayon

🖍️ R package for colored terminal output

cronr

A simple R package for managing your cron jobs.

ctdna_output_filter

esquisse

RStudio add-in to make plots with ggplot2

fusionpathway

g2p-aggregator

Associations of genomic features, drugs and diseases

gcf-docker

Docker files for autmated buids at dockerhub

genefuse

Gene fusion detection and visualization

hiv_deeplearning

HIV Drug Resistance Prediction with Deep Learning

metnormalizer

MetNormalizer is used to normalize large scale metabolomics data.

microbiome_helper

A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.

mural

MuRaL is a deep learning framework for estimating single-nucleotide mutation rates across the genome.

my_blog

my_rscript

my_work_script

mynextflow

neat-genreads

NEAT read simulation tools

nextflow_cheatsheet

Useful tips to get started with Nextflow

numbat

Haplotype-aware CNV analysis from single-cell RNA-seq

pdfsam

PDFsam, a desktop application to split, merge, mix, rotate PDF files and extract pages

pori

Platform for Oncogenomic Reporting and Interpretation (PORI)

qihaowei89

Config files for my GitHub profile.

reference_data

Reference data: BED files, genes, transcripts, variations.