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2018_asm_workshop

Microbiome Analysis Using R Workshop hosted at the 2018 ASM General Meeting in Atlanta, GA.

admixtools

Tools test whether admixture occurred and more

agape

AGAPE (Automated Genome Analysis PipelinE) for yeast pan-genome analysis

aging_ml

anticancer-compounds-ml

source code for MS project

anvio

An analysis and visualization platform for 'omics data

applied-computational-genomics

Applied Computational Genomics Course at UU: Spring 2017

ar.js

Efficient Augmented Reality for the Web - 60fps on mobile!

awesome-adversarial-examples-dl

A curated list of awesome resources for adversarial examples in deep learning

awesome-cancer-variant-databases

A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.

awesome-deep-learning-papers

The most cited deep learning papers

awesome-public-datasets

An awesome list of high-quality open datasets in public domains (on-going).

awesome-rnn

Recurrent Neural Network - A curated list of resources dedicated to RNN

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

ballgown

Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.

bcbb

Incubator for useful bioinformatics code, primarily in Python and R

big-data-code

Source code for Big Data: Principles and best practices of scalable realtime data systems

bio-imaging-1

bioc2016eda

bioc2018

BioC 2018: Where Software and Biology Connect

biocintro

Course material for introductory R / Bioconductor courses

biocworkshops2019

The official repository of the Bioconductor 2019 Conference Workshops :confetti_ball:

bioinflatexstyles

Bibtex compatible latex templates for a selection of Bioinformatics and Genomics journals

bioperl-live

Core BioPerl 1.x code

biopython

Official git repository for Biopython (converted from CVS)

bolotie

SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity

bookdown

Authoring Books and Technical Documents with R Markdown

breseq

breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data. It is intended for haploid microbial genomes (<20 Mb). breseq is a command line tool implemented in C++ and R. More information at

cadrres

Cancer Drug Response prediction using a Recommender System

capsnet-tensorflow

A Tensorflow implementation of CapsNet(Capsules Net) in Hinton's paper Dynamic Routing Between Capsules