A meta package for data science in julia
License: Other
Queryverse.jl is a meta package that pulls together a number of packages for handling data in julia. You can learn more at https://www.queryverse.org/.
You can add the package with:
pkg> add Queryverse
![github-actions[bot] avatar](https://avatars.githubusercontent.com/in/15368?v=4 "github-actions[bot]")
The latest version of Parquet.jl is 0.8.0.
Queryverse requires 0.4.0
The 0.4.0 version doesn't play well with DataFrames.
[ Info: Precompiling Queryverse [612083be-0b0f-5412-89c1-4e7c75506a58]
ERROR: LoadError: NodeJS not properly installed. Please run
Pkg.build("NodeJS")
Stacktrace:
[1] error(::String) at .\error.jl:33
[2] top-level scope at C:\Users\mattdadmin.juliapro\packages\NodeJS\DsGew\src\NodeJS.jl:7
[3] include at .\boot.jl:317 [inlined]
[4] include_relative(::Module, ::String) at .\loading.jl:1044
[5] include(::Module, ::String) at .\sysimg.jl:29
[6] top-level scope at none:2
[7] eval at .\boot.jl:319 [inlined]
[8] eval(::Expr) at .\client.jl:393
[9] top-level scope at .\none:3
in expression starting at C:\Users\mattdadmin.juliapro\packages\NodeJS\DsGew\src\NodeJS.jl:6
ERROR: LoadError: Failed to precompile NodeJS [2bd173c7-0d6d-553b-b6af-13a54713934c] to C:\Users\mat
tdadmin.juliapro\compiled\v1.0\NodeJS\A9Jiy.ji.
Stacktrace:
[1] error(::String) at .\error.jl:33
[2] macro expansion at .\logging.jl:311 [inlined]
[3] compilecache(::Base.PkgId, ::String) at .\loading.jl:1190
[4] macro expansion at .\logging.jl:309 [inlined]
[5] _require(::Base.PkgId) at .\loading.jl:947
[6] require(::Base.PkgId) at .\loading.jl:858
[7] macro expansion at .\logging.jl:309 [inlined]
[8] require(::Module, ::Symbol) at .\loading.jl:840
[9] include at .\boot.jl:317 [inlined]
[10] include_relative(::Module, ::String) at .\loading.jl:1044
[11] include(::Module, ::String) at .\sysimg.jl:29
[12] top-level scope at none:2
[13] eval at .\boot.jl:319 [inlined]
[14] eval(::Expr) at .\client.jl:393
[15] top-level scope at .\none:3
in expression starting at C:\Users\mattdadmin.juliapro\packages\VegaLite\J8uXC\src\VegaLite.jl:3
ERROR: LoadError: Failed to precompile VegaLite [112f6efa-9a02-5b7d-90c0-432ed331239a] to C:\Users\m
attdadmin.juliapro\compiled\v1.0\VegaLite\lrJqi.ji.
Stacktrace:
[1] error(::String) at .\error.jl:33
[2] macro expansion at .\logging.jl:311 [inlined]
[3] compilecache(::Base.PkgId, ::String) at .\loading.jl:1190
[4] macro expansion at .\logging.jl:309 [inlined]
[5] _require(::Base.PkgId) at .\loading.jl:947
[6] require(::Base.PkgId) at .\loading.jl:858
[7] macro expansion at .\logging.jl:309 [inlined]
[8] require(::Module, ::Symbol) at .\loading.jl:840
[9] include at .\boot.jl:317 [inlined]
[10] include_relative(::Module, ::String) at .\loading.jl:1044
[11] include(::Module, ::String) at .\sysimg.jl:29
[12] top-level scope at none:2
[13] eval at .\boot.jl:319 [inlined]
[14] eval(::Expr) at .\client.jl:393
[15] top-level scope at .\none:3
in expression starting at C:\Users\mattdadmin.juliapro\packages\Queryverse\PUhwL\src\Queryverse.jl:
15
I'm using Queryverse package to read SPSS, Stata, and SaS files but I can't write them back to the appropriate file format.
I'm getting the following error
No applicable_savers found for Stata
error(::String)@error.jl:33
[email protected]:11[inlined]
#save#20(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(FileIO.save), ::String, ::DataFrames.DataFrame)@loadsave.jl:128
[email protected]:126[inlined]
top-level scope@Local: 1[inlined]
The writing functionality is not implemented yet, or there is a different reason why I could not write data say in Stata format?
I'm relatively new in Julia world
Parquet.jl has changed their exports, which makes ParquetFiles.jl fail.
Since Queryverse relies on ParquetFiles, you can't just install Julia, add Queryverse, and use it, since it will fail with....
julia> using Queryverse
[ Info: Precompiling Queryverse [612083be-0b0f-5412-89c1-4e7c75506a58]
ERROR: LoadError: UndefVarError: RecCursor not defined
Stacktrace:
[1] top-level scope at /home/ubuntu/.julia/packages/ParquetFiles/cLLFb/src/ParquetFiles.jl:26
[2] include(::Module, ::String) at ./Base.jl:377
[3] top-level scope at none:2
[4] eval at ./boot.jl:331 [inlined]
[5] eval(::Expr) at ./client.jl:449
[6] top-level scope at ./none:3
in expression starting at /home/ubuntu/.julia/packages/ParquetFiles/cLLFb/src/ParquetFiles.jl:26`
Ask ParquetFiles.jl to update to using RecordCursor, or... get Parquet.jl to reverse their last update, or, if you are an end user trying to make this work - lock Parquet.jl to version 0.4.0 until it is sorted.
like so.
(@v1.4) pkg> add [email protected]
Resolving package versions...
Installed Thrift ─── v0.6.2
Installed Parquet ── v0.4.0
Installed ProtoBuf ─ v0.8.0
Updating `~/.julia/environments/v1.4/Project.toml`
[626c502c] + Parquet v0.4.0
Updating `~/.julia/environments/v1.4/Manifest.toml`
[626c502c] ↓ Parquet v0.5.0 ⇒ v0.4.0
[3349acd9] + ProtoBuf v0.8.0
[8d9c9c80] ↓ Thrift v0.7.0 ⇒ v0.6.2
[815b9798] - ThriftJuliaCompiler_jll v0.11.0+0
Building Thrift → `~/.julia/packages/Thrift/Xjowa/deps/build.log`
julia> using Queryverse
[ Info: Precompiling Queryverse [612083be-0b0f-5412-89c1-4e7c75506a58]
julia>
This issue is used to trigger TagBot; feel free to unsubscribe.
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I'll open a PR within a few hours, please be patient!
Found Query not being able to update to v1.0 due to Queryverse v0.6.1 not having it declared as compatible on its Project.toml.
Here is the discourse I opened:
https://discourse.julialang.org/t/importing-query-getting-replacena-not-defined/45299
INFO: Precompiling module HTTP.
ERROR: LoadError: LoadError: base64 binary data: G1s5MW1lcnJvciBjb21waWxpbmcgVHlwZTogY291bGQgbm90IGxvYWQgbGlicmFyeSAiQzpcVXNlcnNcanBuaWVcQXBwRGF0YVxMb2NhbFxKdWxpYVByby0wLjYuMy4xXHBrZ3MtMC42LjMuMVx2MC42XE1iZWRUTFNcc3JjXC4uXGRlcHNcdXNyXGJpblxsaWJtYmVkdGxzLmRsbCIKgHvLG1szOW0KU3RhY2t0cmFjZToKIFsxXSA=
include_from_node1(::String) at .\loading.jl:576
[2] include(::String) at .\sysimg.jl:14
[3] include_from_node1(::String) at .\loading.jl:576
[4] include(::String) at .\sysimg.jl:14
[5] anonymous at .<missing>:2
while loading C:\Users\jpnie\AppData\Local\JuliaPro-0.6.3.1\pkgs-0.6.3.1\v0.6\HTTP\src\compat.jl, in expression starting on line 78
while loading C:\Users\jpnie\AppData\Local\JuliaPro-0.6.3.1\pkgs-0.6.3.1\v0.6\HTTP\src\HTTP.jl, in expression starting on line 14
LoadError: LoadError: Failed to precompile HTTP to C:\Users\jpnie\AppData\Local\JuliaPro-0.6.3.1\pkgs-0.6.3.1\lib\v0.6\HTTP.ji.
while loading C:\Users\jpnie\AppData\Local\JuliaPro-0.6.3.1\pkgs-0.6.3.1\v0.6\CSVFiles\src\CSVFiles.jl, in expression starting on line 3
while loading C:\Users\jpnie\AppData\Local\JuliaPro-0.6.3.1\pkgs-0.6.3.1\v0.6\Queryverse\src\Queryverse.jl, in expression starting on line 12
Stacktrace:
[1] compilecache(::String) at .\loading.jl:710
[2] _require(::Symbol) at .\loading.jl:497
[3] require(::Symbol) at .\loading.jl:405
[4] include_from_node1(::String) at .\loading.jl:576
[5] eval(::Module, ::Any) at .\boot.jl:235
[6] _require(::Symbol) at .\loading.jl:490
[7] require(::Symbol) at .\loading.jl:405
[8] include_from_node1(::String) at .\loading.jl:576
[9] eval(::Module, ::Any) at .\boot.jl:235
[10] _require(::Symbol) at .\loading.jl:490
[11] require(::Symbol) at .\loading.jl:405
But we need to be careful to only load it in the REPL, but not VS Code or Juno...
In the Introduction to Queryverse notebook here the @group_by macro seems to work as follows:
My question is this: What is the correct way to group by multiple columns, rather than just 1? For example, in the notebook above, we have:
cars |> @groupby(_.Origin, _.Acceleration) |> @map({Origin=_.key, MeanAcceleration=mean(_)})
So we are grouping by Origin and passing in Acceleration as the data in each group.
What if I wanted to group by both Origin and number of cylinders?
Is there a best practice way to do that?
hi,
I am able to add the individual packages of Queryvserse. However, Pkg.add("Queryverse") is not working Atom with Julia 1.2 with the following error. I got the same error from my local Anaconda Jupiter. thanks for looking at it.
julia> Pkg.add("Queryverse")
Resolving package versions...
ERROR: MethodError: Cannot convert an object of type Nothing to an object of type String
Closest candidates are:
convert(::Type{String}, ::WeakRefStrings.WeakRefString) at C:\Users\drcxcruz.juliapro\JuliaPro_v1.2.0-1\packages\WeakRefStrings\POE8H\src\WeakRefStrings.jl:77
convert(::Type{String}, ::TextParse.VectorBackedUTF8String) at C:\Users\drcxcruz.juliapro\JuliaPro_v1.2.0-1\packages\TextParse\tFXtC\src\VectorBackedStrings.jl:84
convert(::Type{T<:AbstractString}, ::T<:AbstractString) where T<:AbstractString at strings/basic.jl:208
...
Stacktrace:
[1] setindex!(::Dict{Base.UUID,String}, ::Nothing, ::Base.UUID) at .\dict.jl:380
[2] deps_graph(::Pkg.Types.Context, ::Dict{Base.UUID,String}, ::Dict{Base.UUID,Pkg.Types.VersionSpec}, ::Dict{Base.UUID,Pkg.Types.Fixed}) at C:\Users\julia\AppData\Local\Julia-1.2.0\share\julia\stdlib\v1.2\Pkg\src\Operations.jl:312
[3] resolve_versions!(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}, ::Nothing) at C:\Users\julia\AppData\Local\Julia-1.2.0\share\julia\stdlib\v1.2\Pkg\src\Operations.jl:386
[4] resolve_versions! at C:\Users\julia\AppData\Local\Julia-1.2.0\share\julia\stdlib\v1.2\Pkg\src\Operations.jl:328 [inlined]
[5] #add_or_develop#63(::Array{Base.UUID,1}, ::Symbol, ::typeof(Pkg.Operations.add_or_develop), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at C:\Users\julia\AppData\Local\Julia-1.2.0\share\julia\stdlib\v1.2\Pkg\src\Operations.jl:1235
[6] #add_or_develop at .\none:0 [inlined]
[7] #add_or_develop#17(::Symbol, ::Bool, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.add_or_develop), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at C:\Users\julia\AppData\Local\Julia-1.2.0\share\julia\stdlib\v1.2\Pkg\src\API.jl:59
[8] #add_or_develop at .\none:0 [inlined]
[9] #add_or_develop#16 at C:\Users\julia\AppData\Local\Julia-1.2.0\share\julia\stdlib\v1.2\Pkg\src\API.jl:36 [inlined]
[10] #add_or_develop at .\none:0 [inlined]
[11] #add_or_develop#13 at C:\Users\julia\AppData\Local\Julia-1.2.0\share\julia\stdlib\v1.2\Pkg\src\API.jl:34 [inlined]
[12] #add_or_develop at .\none:0 [inlined]
[13] #add_or_develop#12(::Base.Iterators.Pairs{Symbol,Symbol,Tuple{Symbol},NamedTuple{(:mode,),Tuple{Symbol}}}, ::typeof(Pkg.API.add_or_develop), ::String) at C:\Users\julia\AppData\Local\Julia-1.2.0\share\julia\stdlib\v1.2\Pkg\src\API.jl:33
[14] add(::String) at .\none:0
[15] top-level scope at none:0
Hello,
http://www.david-anthoff.com/jl4ds/stable/fileio.html shows usage such as
df = load("https://raw.githubusercontent.com/davidanthoff/CSVFiles.jl/master/test/data.csv") |> DataFrame
maybe a cache mechanism (such as https://github.com/helgee/RemoteFiles.jl or https://github.com/oxinabox/DataDeps.jl ) should be integrated to Queryverse (or at least its usage be better documented)
A possible API could be
df = load(RemoteFile("https://raw.githubusercontent.com/davidanthoff/CSVFiles.jl/master/test/data.csv", "data.csv")) |> DataFrame
or
df = load(RemoteFile("https://raw.githubusercontent.com/davidanthoff/CSVFiles.jl/master/test/data.csv")) |> DataFrame
So file will be stored with data.csv as filename (by default) and inside a default directory
But this is probably not the right place to suggest this... maybe FileIO?
Kind regards
Hello,
I was working through your excellent video "Intro to the Queryverse" (https://youtu.be/OFPNph-WxLM?t=6050)) and didn't get the same output as you. Your results were:
When I run the code below I receive an error
cars |> @groupby(_.Origin) |> @map(_.key)
This behaviour happens with Julia 0.6.4 on Mac OS and Queryverse 0.0.2.
Calling using Queyverse crashes and exists the whole Julia REPL instance with the following error message: ImportError: No module named site
This behaviour is consistent on the CLI, Jupyter and Juno.
I'm not sure it's known, but it seems reordering files, matters a lot (but end-result should be the same?):
$ julia -q -O0
julia> @time using CSVFiles, ExcelFiles, StatFiles, ParquetFiles, DataFrames, VegaLite
7.033658 seconds (14.33 M allocations: 857.918 MiB, 5.21% gc time)
$ julia -q -O0
julia> @time using VegaLite, DataFrames, ParquetFiles, StatFiles, ExcelFiles, CSVFiles
8.916748 seconds (18.03 M allocations: 1.045 GiB, 5.08% gc time)
$ julia -q -O0
julia> @time using VegaLite, DataFrames, ParquetFiles, StatFiles, ExcelFiles, CSVFiles
8.845061 seconds (18.03 M allocations: 1.045 GiB, 5.09% gc time)
$ julia -q -O0
julia> @time using VegaLite, DataFrames, ParquetFiles, StatFiles, ExcelFiles, CSVFiles
8.816272 seconds (18.03 M allocations: 1.045 GiB, 5.07% gc time)
l$ julia -q -O0
julia> @time using VegaLite, DataFrames, ParquetFiles, StatFiles, ExcelFiles, CSVFiles
9.025282 seconds (18.03 M allocations: 1.045 GiB, 4.99% gc time)
Hello trying to use Queryverse, run into problem whent it is precompiling:
Below is the message I get from initial install of Queryverse. The problem is clearly first in Cairo. When I try to locally build Cairo, I get the following:
Get similar tasting error:
┌ Error: Error building Cairo:
│
│ signal (11): Segmentation fault: 11
│ in expression starting at /Users/sdanthine/.julia/packages/Cairo/CXPG1/deps/build.jl:165
│ _platform_strcmp at /usr/lib/system/libsystem_platform.dylib (unknown line)
│ Allocations: 19234553 (Pool: 19231774; Big: 2779); GC: 42
Funny thing is, managed to build it on one computer, not on the other. Both are Mac Mojave, both times initially Queryverse needed Cairo.
Error message when precompiling:
┌ Error: Error building Cairo, showing the last 100 of log:
│ See: https://docs.brew.sh/Homebrew-and-Python
│ ==> Summary
│ 🍺 /Users/sdanthine/.julia/packages/Homebrew/s09IX/deps/usr/Cellar/python/3.7.2_2: 3,861 files, 59.7MB
│ Warning: Already linked: /Users/sdanthine/.julia/packages/Homebrew/s09IX/deps/usr/Cellar/python/3.7.2_2
│ ==> Installing libffi from staticfloat/juliatranslated
│ ==> Downloading https://homebrew.bintray.com/bottles/libffi-3.2.1.mojave.bottle.tar.gz
│ Already downloaded: /Users/sdanthine/Library/Caches/Homebrew.jl/downloads/89b4ef328be250153e7a2b39982ac446e0b3bbfe7f3e2708912ba1976862c302--libffi-3.2.1.mojave.bottle.tar.gz
│ ==> Pouring libffi-3.2.1.mojave.bottle.tar.gz
│ ==> Caveats
│ libffi is keg-only, which means it was not symlinked into /Users/sdanthine/.julia/packages/Homebrew/s09IX/deps/usr,
│ because some formulae require a newer version of libffi.
│
│ For compilers to find libffi you may need to set:
│ export LDFLAGS="-L/Users/sdanthine/.julia/packages/Homebrew/s09IX/deps/usr/opt/libffi/lib"
│
│ For pkg-config to find libffi you may need to set:
│ export PKG_CONFIG_PATH="/Users/sdanthine/.julia/packages/Homebrew/s09IX/deps/usr/opt/libffi/lib/pkgconfig"
│
│ ==> Summary
│ 🍺 /Users/sdanthine/.julia/packages/Homebrew/s09IX/deps/usr/Cellar/libffi/3.2.1: 16 files, 297.0KB
│ ==> Installing glib from staticfloat/juliatranslated
│ ==> Downloading https://homebrew.bintray.com/bottles/glib-2.60.0_1.mojave.bottle.tar.gz
│ ==> Pouring glib-2.60.0_1.mojave.bottle.tar.gz
│ 🍺 /Users/sdanthine/.julia/packages/Homebrew/s09IX/deps/usr/Cellar/glib/2.60.0_1: 432 files, 15.3MB
│ Warning: Already linked: /Users/sdanthine/.julia/packages/Homebrew/s09IX/deps/usr/Cellar/glib/2.60.0_1
│ ==> Installing libpng from staticfloat/juliatranslated
│ ==> Downloading https://homebrew.bintray.com/bottles/libpng-1.6.36.mojave.bottle.tar.gz
│ Already downloaded: /Users/sdanthine/Library/Caches/Homebrew.jl/downloads/b401f5b07a537975da7de448c4bbdaf0c2112d5dc7d8e0955e0d4fb938909010--libpng-1.6.36.mojave.bottle.tar.gz
│ ==> Pouring libpng-1.6.36.mojave.bottle.tar.gz
│ 🍺 /Users/sdanthine/.julia/packages/Homebrew/s09IX/deps/usr/Cellar/libpng/1.6.36: 27 files, 1.2MB
│ Warning: Already linked: /Users/sdanthine/.julia/packages/Homebrew/s09IX/deps/usr/Cellar/libpng/1.6.36
│ ==> Installing freetype from staticfloat/juliatranslated
│ ==> Downloading https://homebrew.bintray.com/bottles/freetype-2.9.1.mojave.bottle.tar.gz
│ Already downloaded: /Users/sdanthine/Library/Caches/Homebrew.jl/downloads/89f20f0e2fae652cad0bf2c354912f65951b055050a0cf525f6a67939cb6e682--freetype-2.9.1.mojave.bottle.tar.gz
│ ==> Pouring freetype-2.9.1.mojave.bottle.tar.gz
│ 🍺 /Users/sdanthine/.julia/packages/Homebrew/s09IX/deps/usr/Cellar/freetype/2.9.1: 60 files, 2.6MB
│ Warning: Already linked: /Users/sdanthine/.julia/packages/Homebrew/s09IX/deps/usr/Cellar/freetype/2.9.1
│ ==> Installing fontconfig from staticfloat/juliatranslated
│ ==> Downloading https://homebrew.bintray.com/bottles/fontconfig-2.13.1.mojave.bottle.tar.gz
│ Already downloaded: /Users/sdanthine/Library/Caches/Homebrew.jl/downloads/b7ad94d49bcdca22738f50b570efc07c7a20f98a469b3c4b32198b7318b8af5a--fontconfig-2.13.1.mojave.bottle.tar.gz
│ ==> Pouring fontconfig-2.13.1.mojave.bottle.tar.gz
│ ==> Regenerating font cache, this may take a while
│ ==> /Users/sdanthine/.julia/packages/Homebrew/s09IX/deps/usr/Cellar/fontconfig/2.13.1/bin/fc-cache -frv
│ 🍺 /Users/sdanthine/.julia/packages/Homebrew/s09IX/deps/usr/Cellar/fontconfig/2.13.1: 531 files, 3.3MB
│ Warning: Already linked: /Users/sdanthine/.julia/packages/Homebrew/s09IX/deps/usr/Cellar/fontconfig/2.13.1
│ ==> Installing pixman from staticfloat/juliatranslated
│ ==> Downloading https://homebrew.bintray.com/bottles/pixman-0.38.0.mojave.bottle.tar.gz
│ Already downloaded: /Users/sdanthine/Library/Caches/Homebrew.jl/downloads/0c26d4c3daf0b26cd91366caf1df3eca0bad5611e9742a0f8b409d6b80fc6a53--pixman-0.38.0.mojave.bottle.tar.gz
│ ==> Pouring pixman-0.38.0.mojave.bottle.tar.gz
│ 🍺 /Users/sdanthine/.julia/packages/Homebrew/s09IX/deps/usr/Cellar/pixman/0.38.0: 13 files, 1.3MB
│ Warning: Already linked: /Users/sdanthine/.julia/packages/Homebrew/s09IX/deps/usr/Cellar/pixman/0.38.0
│ ==> Installing cairo from staticfloat/juliatranslated
│ ==> Downloading https://homebrew.bintray.com/bottles/cairo-1.16.0.mojave.bottle.tar.gz
│ Already downloaded: /Users/sdanthine/Library/Caches/Homebrew.jl/downloads/fafc9fd181a939883ef055697994edea57d091a35299109bf774fc91092fbae7--cairo-1.16.0.mojave.bottle.tar.gz
│ ==> Pouring cairo-1.16.0.mojave.bottle.tar.gz
│ 🍺 /Users/sdanthine/.julia/packages/Homebrew/s09IX/deps/usr/Cellar/cairo/1.16.0: 117 files, 5.5MB
│ Warning: Already linked: /Users/sdanthine/.julia/packages/Homebrew/s09IX/deps/usr/Cellar/cairo/1.16.0
│ ==> Installing icu4c from staticfloat/juliatranslated
│ ==> Downloading https://homebrew.bintray.com/bottles/icu4c-63.1.mojave.bottle.tar.gz
│ Already downloaded: /Users/sdanthine/Library/Caches/Homebrew.jl/downloads/88108185da55bf1af475d5e191e97f633514bd24c1c70bb89029af6cf5cc5185--icu4c-63.1.mojave.bottle.tar.gz
│ ==> Pouring icu4c-63.1.mojave.bottle.tar.gz
│ ==> Caveats
│ icu4c is keg-only, which means it was not symlinked into /Users/sdanthine/.julia/packages/Homebrew/s09IX/deps/usr,
│ because macOS provides libicucore.dylib (but nothing else).
│
│ If you need to have icu4c first in your PATH run:
│ echo 'export PATH="/Users/sdanthine/.julia/packages/Homebrew/s09IX/deps/usr/opt/icu4c/bin:$PATH"' >> ~/.bash_profile
│ echo 'export PATH="/Users/sdanthine/.julia/packages/Homebrew/s09IX/deps/usr/opt/icu4c/sbin:$PATH"' >> ~/.bash_profile
│
│ For compilers to find icu4c you may need to set:
│ export LDFLAGS="-L/Users/sdanthine/.julia/packages/Homebrew/s09IX/deps/usr/opt/icu4c/lib"
│ export CPPFLAGS="-I/Users/sdanthine/.julia/packages/Homebrew/s09IX/deps/usr/opt/icu4c/include"
│
│ For pkg-config to find icu4c you may need to set:
│ export PKG_CONFIG_PATH="/Users/sdanthine/.julia/packages/Homebrew/s09IX/deps/usr/opt/icu4c/lib/pkgconfig"
│
│ ==> Summary
│ 🍺 /Users/sdanthine/.julia/packages/Homebrew/s09IX/deps/usr/Cellar/icu4c/63.1: 254 files, 68.4MB
│ ==> Installing fribidi from staticfloat/juliatranslated
│ ==> Downloading https://homebrew.bintray.com/bottles/fribidi-1.0.5.mojave.bottle.tar.gz
│ Already downloaded: /Users/sdanthine/Library/Caches/Homebrew.jl/downloads/b966c6f589c81500014b64f8e15ff29e9b70f3e7ee8e0b0b5851f700c2ad0fa4--fribidi-1.0.5.mojave.bottle.tar.gz
│ ==> Pouring fribidi-1.0.5.mojave.bottle.tar.gz
│ 🍺 /Users/sdanthine/.julia/packages/Homebrew/s09IX/deps/usr/Cellar/fribidi/1.0.5: 66 files, 581.4KB
│ Warning: Already linked: /Users/sdanthine/.julia/packages/Homebrew/s09IX/deps/usr/Cellar/fribidi/1.0.5
│ ==> Installing harfbuzz from staticfloat/juliatranslated
│ ==> Downloading https://homebrew.bintray.com/bottles/harfbuzz-2.3.1.mojave.bottle.tar.gz
│ Already downloaded: /Users/sdanthine/Library/Caches/Homebrew.jl/downloads/784a181552c10546bdab9595d963a36fa65d6e17cc04609285349cb81be623b9--harfbuzz-2.3.1.mojave.bottle.tar.gz
│ ==> Pouring harfbuzz-2.3.1.mojave.bottle.tar.gz
│ 🍺 /Users/sdanthine/.julia/packages/Homebrew/s09IX/deps/usr/Cellar/harfbuzz/2.3.1: 180 files, 9.5MB
│ Warning: Already linked: /Users/sdanthine/.julia/packages/Homebrew/s09IX/deps/usr/Cellar/harfbuzz/2.3.1
│ ==> Installing pango from staticfloat/juliatranslated
│ ==> Downloading https://homebrew.bintray.com/bottles/pango-1.42.4_1.mojave.bottle.tar.gz
│ Already downloaded: /Users/sdanthine/Library/Caches/Homebrew.jl/downloads/f7d576fd30d48fab15ea38e97c79854a517864b3a64199be1550eb79e1143cf3--pango-1.42.4_1.mojave.bottle.tar.gz
│ ==> Pouring pango-1.42.4_1.mojave.bottle.tar.gz
│ 🍺 /Users/sdanthine/.julia/packages/Homebrew/s09IX/deps/usr/Cellar/pango/1.42.4_1: 106 files, 4.4MB
│ Warning: Already linked: /Users/sdanthine/.julia/packages/Homebrew/s09IX/deps/usr/Cellar/pango/1.42.4_1
│
│ signal (11): Segmentation fault: 11
│ in expression starting at /Users/sdanthine/.julia/packages/Cairo/CXPG1/deps/build.jl:165
│ _platform_strcmp at /usr/lib/system/libsystem_platform.dylib (unknown line)
│ Allocations: 20858472 (Pool: 20855284; Big: 3188); GC: 46
│
│ Full log at /Users/sdanthine/.julia/packages/Cairo/CXPG1/deps/build.log
I have posted similar question on the Cairo git..
JuliaGraphics/Cairo.jl#271
First off: Queryverse.jl is absolutely awesome!
Is there a way to use other plotting libraries instead of vega lite? And if so, how would you integrate them in the pipeline?
Hello,
I tried to load a small dataset and it seems to take a lot of time to do so. It also seems that using Queryverse takes a significant amount of time.
@time using Queryverse
17.643986 seconds (43.33 M allocations: 2.193 GiB, 6.44% gc time)
@time df = DataFrame(load("iris.csv"))
17.341491 seconds (55.15 M allocations: 2.607 GiB, 11.01% gc time)
The second time I load data is much faster though.
@time df = DataFrame(load("iris.csv"))
0.001057 seconds (5.01 k allocations: 210.609 KiB)
Is there a command to precompile or another way to make this faster?
Hello,
I encountered some errors while trying to add Queryverse in an environment I am currently using, so I made a new one but unfortunately the same error appeared again (I'm using Julia 1.6.0).
Specifically, I am interested in using the load function.
So I created a new env:
(@v1.6) pkg> activate .
Activating new environment at `E:\IlMIoDrive\magistrale\2anno\primo_periodo\computationalEpi\temporary_env\Project.toml`
(temporary_env) pkg> st
Status `E:\IlMIoDrive\magistrale\2anno\primo_periodo\computationalEpi\temporary_env\Project.toml` (empty project)And installed Queryverse:
(temporary_env) pkg> add Queryverse
Updating registry at `C:\Users\claud\.julia\registries\General`
Updating git-repo `https://github.com/JuliaRegistries/General.git`
Resolving package versions...
Updating `E:\IlMIoDrive\magistrale\2anno\primo_periodo\computationalEpi\temporary_env\Project.toml`
[612083be] + Queryverse v0.6.2
Updating `E:\IlMIoDrive\magistrale\2anno\primo_periodo\computationalEpi\temporary_env\Manifest.toml`
[69666777] + Arrow v0.2.4
[b99e7846] + BinaryProvider v0.5.10
[5d742f6a] + CSVFiles v1.0.0
[324d7699] + CategoricalArrays v0.8.3
[d360d2e6] + ChainRulesCore v0.9.37
[944b1d66] + CodecZlib v0.6.0
[6b39b394] + CodecZstd v0.7.0
[34da2185] + Compat v3.26.0
[8f4d0f93] + Conda v1.5.1
[187b0558] + ConstructionBase v1.1.0
[9a962f9c] + DataAPI v1.6.0
[a93c6f00] + DataFrames v0.21.8
[864edb3b] + DataStructures v0.18.9
[743a1d0a] + DataTables v0.1.0
[e2d170a0] + DataValueInterfaces v1.0.0
[e7dc6d0d] + DataValues v0.4.13
[5721bf48] + DataVoyager v1.0.0
[497a8b3b] + DoubleFloats v1.1.18
[a1bb12fb] + Electron v2.0.1
[89b67f3b] + ExcelFiles v1.0.0
[c04bee98] + ExcelReaders v0.11.0
[e2ba6199] + ExprTools v0.1.3
[8f5d6c58] + EzXML v1.1.0
[b675d258] + FeatherFiles v0.8.1
[409f5150] + FeatherLib v0.2.0
[5789e2e9] + FileIO v1.6.5
[8fc22ac5] + FilePaths v0.8.2
[48062228] + FilePathsBase v0.9.10
[53afe959] + FlatBuffers v0.5.4
[01680d73] + GenericSVD v0.3.0
[c145ed77] + GenericSchur v0.5.0
[c27321d9] + Glob v1.3.0
[cd3eb016] + HTTP v0.8.19
[83e8ac13] + IniFile v0.5.0
[d8418881] + Intervals v1.5.0
[41ab1584] + InvertedIndices v1.0.0
[1c8ee90f] + IterableTables v1.0.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[692b3bcd] + JLLWrappers v1.2.0
[682c06a0] + JSON v0.21.1
[7d188eb4] + JSONSchema v0.3.3
[1914dd2f] + MacroTools v0.5.6
[739be429] + MbedTLS v1.0.3
[f9f48841] + MemPool v0.2.0
[e1d29d7a] + Missings v0.4.5
[78c3b35d] + Mocking v0.7.1
[2bd173c7] + NodeJS v1.1.2
[4d1e1d77] + Nullables v1.0.0
[bac558e1] + OrderedCollections v1.4.0
[d96e819e] + Parameters v0.12.2
[626c502c] + Parquet v0.4.0
[46a55296] + ParquetFiles v0.2.0
[69de0a69] + Parsers v1.1.0
[f27b6e38] + Polynomials v2.0.5
[2dfb63ee] + PooledArrays v0.5.3
[3349acd9] + ProtoBuf v0.8.0
[438e738f] + PyCall v1.92.2
[be4d8f0f] + Quadmath v0.5.5
[1a8c2f83] + Query v1.0.0
[2aef5ad7] + QueryOperators v0.9.3
[612083be] + Queryverse v0.6.2
[988b38a3] + ReadOnlyArrays v0.1.1
[d71aba96] + ReadStat v1.0.2
[3cdcf5f2] + RecipesBase v1.1.1
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.1.3
[efcf1570] + Setfield v0.7.0
[59d4ed8c] + Snappy v0.3.0
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v1.3.0
[1463e38c] + StatFiles v0.8.0
[856f2bd8] + StructTypes v1.5.2
[5e66a065] + TableShowUtils v0.2.5
[3783bdb8] + TableTraits v1.0.1
[382cd787] + TableTraitsUtils v1.0.1
[bd369af6] + Tables v1.4.1
[e0df1984] + TextParse v1.0.1
[8d9c9c80] + Thrift v0.6.2
[f269a46b] + TimeZones v1.5.3
[3bb67fe8] + TranscodingStreams v0.9.5
[30578b45] + URIParser v0.4.1
[3a884ed6] + UnPack v1.0.2
[239c3e63] + Vega v2.1.1
[112f6efa] + VegaLite v2.4.0
[81def892] + VersionParsing v1.2.0
[ea10d353] + WeakRefStrings v0.6.2
[fdbf4ff8] + XLSX v0.7.6
[a5390f91] + ZipFile v0.9.3
[94ce4f54] + Libiconv_jll v1.16.0+7
[efe28fd5] + OpenSpecFun_jll v0.5.3+4
[a4dc8951] + ReadStat_jll v1.1.1+0
[02c8fc9c] + XML2_jll v2.9.11+0
[3161d3a3] + Zstd_jll v1.4.8+0
[0dad84c5] + ArgTools
[56f22d72] + Artifacts
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[f43a241f] + Downloads
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[b27032c2] + LibCURL
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[ca575930] + NetworkOptions
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[fa267f1f] + TOML
[a4e569a6] + Tar
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
[e66e0078] + CompilerSupportLibraries_jll
[deac9b47] + LibCURL_jll
[29816b5a] + LibSSH2_jll
[c8ffd9c3] + MbedTLS_jll
[14a3606d] + MozillaCACerts_jll
[83775a58] + Zlib_jll
[8e850ede] + nghttp2_jll
[3f19e933] + p7zip_jll
Precompiling project...
Progress [========================================>] 6/6
✗ CodecZlib
✗ Parquet
✗ TextParse
✗ CSVFiles
✗ ParquetFiles
✗ Queryverse
0 dependencies successfully precompiled in 25 seconds (91 already precompiled)
6 dependencies erroredAnd, as you see, precompilation failed. Indeed, it doesn't work when using Queryverse:
julia> using Queryverse
[ Info: Precompiling Queryverse [612083be-0b0f-5412-89c1-4e7c75506a58]
ERROR: LoadError: CodecZlib.jl is not installed properly, run Pkg.build("CodecZlib") and restart Julia.
Stacktrace:
[1] error(s::String)
@ Base .\error.jl:33
[2] top-level scope
@ ~\.julia\packages\CodecZlib\5t9zO\src\CodecZlib.jl:34
[3] include
@ .\Base.jl:386 [inlined]
[4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::String)
@ Base .\loading.jl:1213
[5] top-level scope
@ none:1
[6] eval
@ .\boot.jl:360 [inlined]
[7] eval(x::Expr)
@ Base.MainInclude .\client.jl:446
[8] top-level scope
@ none:1
in expression starting at C:\Users\claud\.julia\packages\CodecZlib\5t9zO\src\CodecZlib.jl:1
ERROR: LoadError: Failed to precompile CodecZlib [944b1d66-785c-5afd-91f1-9de20f533193] to C:\Users\claud\.julia\compiled\v1.6\CodecZlib\jl_A729.tmp.
Stacktrace:
[1] error(s::String)
@ Base .\error.jl:33
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::Base.TTY, internal_stdout::Base.TTY)
@ Base .\loading.jl:1360
[3] compilecache(pkg::Base.PkgId, path::String)
@ Base .\loading.jl:1306
[4] _require(pkg::Base.PkgId)
@ Base .\loading.jl:1021
[5] require(uuidkey::Base.PkgId)
@ Base .\loading.jl:914
[6] require(into::Module, mod::Symbol)
@ Base .\loading.jl:901
[7] include
@ .\Base.jl:386 [inlined]
[8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::String)
@ Base .\loading.jl:1213
[9] top-level scope
@ none:1
[10] eval
@ .\boot.jl:360 [inlined]
[11] eval(x::Expr)
@ Base.MainInclude .\client.jl:446
[12] top-level scope
@ none:1
in expression starting at C:\Users\claud\.julia\packages\TextParse\dv6SU\src\TextParse.jl:1
ERROR: LoadError: Failed to precompile TextParse [e0df1984-e451-5cb5-8b61-797a481e67e3] to C:\Users\claud\.julia\compiled\v1.6\TextParse\jl_A610.tmp.
Stacktrace:
[1] error(s::String)
@ Base .\error.jl:33
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::Base.TTY, internal_stdout::Base.TTY)
@ Base .\loading.jl:1360
[3] compilecache(pkg::Base.PkgId, path::String)
@ Base .\loading.jl:1306
[4] _require(pkg::Base.PkgId)
@ Base .\loading.jl:1021
[5] require(uuidkey::Base.PkgId)
@ Base .\loading.jl:914
[6] require(into::Module, mod::Symbol)
@ Base .\loading.jl:901
[7] include
@ .\Base.jl:386 [inlined]
[8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::String)
@ Base .\loading.jl:1213
[9] top-level scope
@ none:1
[10] eval
@ .\boot.jl:360 [inlined]
[11] eval(x::Expr)
@ Base.MainInclude .\client.jl:446
[12] top-level scope
@ none:1
in expression starting at C:\Users\claud\.julia\packages\CSVFiles\C68zw\src\CSVFiles.jl:1
ERROR: LoadError: Failed to precompile CSVFiles [5d742f6a-9f54-50ce-8119-2520741973ca] to C:\Users\claud\.julia\compiled\v1.6\CSVFiles\jl_A4F7.tmp.
Stacktrace:
[1] error(s::String)
@ Base .\error.jl:33
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::Base.TTY, internal_stdout::Base.TTY)
@ Base .\loading.jl:1360
[3] compilecache(pkg::Base.PkgId, path::String)
@ Base .\loading.jl:1306
[4] _require(pkg::Base.PkgId)
@ Base .\loading.jl:1021
[5] require(uuidkey::Base.PkgId)
@ Base .\loading.jl:914
[6] require(into::Module, mod::Symbol)
@ Base .\loading.jl:901
[7] include
@ .\Base.jl:386 [inlined]
[8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::Nothing)
@ Base .\loading.jl:1213
[9] top-level scope
@ none:1
[10] eval
@ .\boot.jl:360 [inlined]
[11] eval(x::Expr)
@ Base.MainInclude .\client.jl:446
[12] top-level scope
@ none:1
in expression starting at C:\Users\claud\.julia\packages\Queryverse\XPALb\src\Queryverse.jl:1
ERROR: Failed to precompile Queryverse [612083be-0b0f-5412-89c1-4e7c75506a58] to C:\Users\claud\.julia\compiled\v1.6\Queryverse\jl_99F1.tmp.
Stacktrace:
[1] error(s::String)
@ Base .\error.jl:33
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::Base.TTY, internal_stdout::Base.TTY)
@ Base .\loading.jl:1360
[3] compilecache(pkg::Base.PkgId, path::String)
@ Base .\loading.jl:1306
[4] _require(pkg::Base.PkgId)
@ Base .\loading.jl:1021
[5] require(uuidkey::Base.PkgId)
@ Base .\loading.jl:914
[6] require(into::Module, mod::Symbol)
@ Base .\loading.jl:901Moreover, by reading the documentation of the load function, I see that it suffices to have FileIO and CSVFiles installed. Unfortunately, CSVFiles gives an error similar to Queryverse.
In the same environment as before, I installed FileIO and CSVFIles:
(temporary_env) pkg> add FileIO
Resolving package versions...
Updating `E:\IlMIoDrive\magistrale\2anno\primo_periodo\computationalEpi\temporary_env\Project.toml`
[5789e2e9] + FileIO v1.6.5
No Changes to `E:\IlMIoDrive\magistrale\2anno\primo_periodo\computationalEpi\temporary_env\Manifest.toml`
(temporary_env) pkg> add CSVFiles
Resolving package versions...
Updating `E:\IlMIoDrive\magistrale\2anno\primo_periodo\computationalEpi\temporary_env\Project.toml`
[5d742f6a] + CSVFiles v1.0.0
No Changes to `E:\IlMIoDrive\magistrale\2anno\primo_periodo\computationalEpi\temporary_env\Manifest.toml`I can using FileIO:
julia> using FileIOBut using CSVFiles gives the following error:
julia> using CSVFiles
[ Info: Precompiling CSVFiles [5d742f6a-9f54-50ce-8119-2520741973ca]
ERROR: LoadError: CodecZlib.jl is not installed properly, run Pkg.build("CodecZlib") and restart Julia.
Stacktrace:
[1] error(s::String)
@ Base .\error.jl:33
[2] top-level scope
@ ~\.julia\packages\CodecZlib\5t9zO\src\CodecZlib.jl:34
[3] include
@ .\Base.jl:386 [inlined]
[4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::String)
@ Base .\loading.jl:1213
[5] top-level scope
@ none:1
[6] eval
@ .\boot.jl:360 [inlined]
[7] eval(x::Expr)
@ Base.MainInclude .\client.jl:446
[8] top-level scope
@ none:1
in expression starting at C:\Users\claud\.julia\packages\CodecZlib\5t9zO\src\CodecZlib.jl:1
ERROR: LoadError: Failed to precompile CodecZlib [944b1d66-785c-5afd-91f1-9de20f533193] to C:\Users\claud\.julia\compiled\v1.6\CodecZlib\jl_C565.tmp.
Stacktrace:
[1] error(s::String)
@ Base .\error.jl:33
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::Base.TTY, internal_stdout::Base.TTY)
@ Base .\loading.jl:1360
[3] compilecache(pkg::Base.PkgId, path::String)
@ Base .\loading.jl:1306
[4] _require(pkg::Base.PkgId)
@ Base .\loading.jl:1021
[5] require(uuidkey::Base.PkgId)
@ Base .\loading.jl:914
[6] require(into::Module, mod::Symbol)
@ Base .\loading.jl:901
[7] include
@ .\Base.jl:386 [inlined]
[8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::String)
@ Base .\loading.jl:1213
[9] top-level scope
@ none:1
[10] eval
@ .\boot.jl:360 [inlined]
[11] eval(x::Expr)
@ Base.MainInclude .\client.jl:446
[12] top-level scope
@ none:1
in expression starting at C:\Users\claud\.julia\packages\TextParse\dv6SU\src\TextParse.jl:1
ERROR: LoadError: Failed to precompile TextParse [e0df1984-e451-5cb5-8b61-797a481e67e3] to C:\Users\claud\.julia\compiled\v1.6\TextParse\jl_C44C.tmp.
Stacktrace:
[1] error(s::String)
@ Base .\error.jl:33
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::Base.TTY, internal_stdout::Base.TTY)
@ Base .\loading.jl:1360
[3] compilecache(pkg::Base.PkgId, path::String)
@ Base .\loading.jl:1306
[4] _require(pkg::Base.PkgId)
@ Base .\loading.jl:1021
[5] require(uuidkey::Base.PkgId)
@ Base .\loading.jl:914
[6] require(into::Module, mod::Symbol)
@ Base .\loading.jl:901
[7] include
@ .\Base.jl:386 [inlined]
[8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::Nothing)
@ Base .\loading.jl:1213
[9] top-level scope
@ none:1
[10] eval
@ .\boot.jl:360 [inlined]
[11] eval(x::Expr)
@ Base.MainInclude .\client.jl:446
[12] top-level scope
@ none:1
in expression starting at C:\Users\claud\.julia\packages\CSVFiles\C68zw\src\CSVFiles.jl:1
ERROR: Failed to precompile CSVFiles [5d742f6a-9f54-50ce-8119-2520741973ca] to C:\Users\claud\.julia\compiled\v1.6\CSVFiles\jl_C359.tmp.
Stacktrace:
[1] error(s::String)
@ Base .\error.jl:33
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::Base.TTY, internal_stdout::Base.TTY)
@ Base .\loading.jl:1360
[3] compilecache(pkg::Base.PkgId, path::String)
@ Base .\loading.jl:1306
[4] _require(pkg::Base.PkgId)
@ Base .\loading.jl:1021
[5] require(uuidkey::Base.PkgId)
@ Base .\loading.jl:914
[6] require(into::Module, mod::Symbol)
@ Base .\loading.jl:901So how can I properly install Queryverse or, if my interpretation of the documentation is correct, exclusively FileIO and CSVFiles ?
Thank you
I am trying to install Queryverse on Julia 1.0.0. It downloads correctly, but fails to install. The full log is below.
$ julia
_
_ _ _(_)_ | Documentation: https://docs.julialang.org
(_) | (_) (_) |
_ _ _| |_ __ _ | Type "?" for help, "]?" for Pkg help.
| | | | | | |/ _` | |
| | |_| | | | (_| | | Version 1.0.0 (2018-08-08)
_/ |\__'_|_|_|\__'_| | Official https://julialang.org/ release
|__/ |
julia> using Pkg
julia> Pkg.add("Queryverse")
Updating registry at `~/.julia/registries/General`
Updating git-repo `https://github.com/JuliaRegistries/General.git`
Resolving package versions...
Updating `~/.julia/environments/v1.0/Project.toml`
[no changes]
Updating `~/.julia/environments/v1.0/Manifest.toml`
[no changes]
julia> using Queryverse
[ Info: Precompiling Queryverse [612083be-0b0f-5412-89c1-4e7c75506a58]
ERROR: LoadError: LoadError: PyCall not properly installed. Please run Pkg.build("PyCall")
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] top-level scope at /home/duque004/.julia/packages/PyCall/rUul9/src/startup.jl:44 [inlined]
[3] top-level scope at ./none:0
[4] include at ./boot.jl:317 [inlined]
[5] include_relative(::Module, ::String) at ./loading.jl:1038
[6] include at ./sysimg.jl:29 [inlined]
[7] include(::String) at /home/duque004/.julia/packages/PyCall/rUul9/src/PyCall.jl:3
[8] top-level scope at none:0
[9] include at ./boot.jl:317 [inlined]
[10] include_relative(::Module, ::String) at ./loading.jl:1038
[11] include(::Module, ::String) at ./sysimg.jl:29
[12] top-level scope at none:2
[13] eval at ./boot.jl:319 [inlined]
[14] eval(::Expr) at ./client.jl:389
[15] top-level scope at ./none:3
in expression starting at /home/duque004/.julia/packages/PyCall/rUul9/src/startup.jl:41
in expression starting at /home/duque004/.julia/packages/PyCall/rUul9/src/PyCall.jl:37
ERROR: LoadError: Failed to precompile PyCall [438e738f-606a-5dbb-bf0a-cddfbfd45ab0] to /home/duque004/.julia/compiled/v1.0/PyCall/GkzkC.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] macro expansion at ./logging.jl:313 [inlined]
[3] compilecache(::Base.PkgId, ::String) at ./loading.jl:1184
[4] _require(::Base.PkgId) at ./logging.jl:311
[5] require(::Base.PkgId) at ./loading.jl:852
[6] macro expansion at ./logging.jl:311 [inlined]
[7] require(::Module, ::Symbol) at ./loading.jl:834
[8] include at ./boot.jl:317 [inlined]
[9] include_relative(::Module, ::String) at ./loading.jl:1038
[10] include(::Module, ::String) at ./sysimg.jl:29
[11] top-level scope at none:2
[12] eval at ./boot.jl:319 [inlined]
[13] eval(::Expr) at ./client.jl:389
[14] top-level scope at ./none:3
in expression starting at /home/duque004/.julia/packages/ExcelReaders/O29uZ/src/ExcelReaders.jl:3
ERROR: LoadError: Failed to precompile ExcelReaders [c04bee98-12a5-510c-87df-2a230cb6e075] to /home/duque004/.julia/compiled/v1.0/ExcelReaders/yiZD3.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] macro expansion at ./logging.jl:313 [inlined]
[3] compilecache(::Base.PkgId, ::String) at ./loading.jl:1184
[4] _require(::Base.PkgId) at ./logging.jl:311
[5] require(::Base.PkgId) at ./loading.jl:852
[6] macro expansion at ./logging.jl:311 [inlined]
[7] require(::Module, ::Symbol) at ./loading.jl:834
[8] include at ./boot.jl:317 [inlined]
[9] include_relative(::Module, ::String) at ./loading.jl:1038
[10] include(::Module, ::String) at ./sysimg.jl:29
[11] top-level scope at none:2
[12] eval at ./boot.jl:319 [inlined]
[13] eval(::Expr) at ./client.jl:389
[14] top-level scope at ./none:3
in expression starting at /home/duque004/.julia/packages/ExcelFiles/A2Rsj/src/ExcelFiles.jl:4
ERROR: LoadError: Failed to precompile ExcelFiles [89b67f3b-d1aa-5f6f-9ca4-282e8d98620d] to /home/duque004/.julia/compiled/v1.0/ExcelFiles/cZRj4.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] macro expansion at ./logging.jl:313 [inlined]
[3] compilecache(::Base.PkgId, ::String) at ./loading.jl:1184
[4] _require(::Base.PkgId) at ./logging.jl:311
[5] require(::Base.PkgId) at ./loading.jl:852
[6] macro expansion at ./logging.jl:311 [inlined]
[7] require(::Module, ::Symbol) at ./loading.jl:834
[8] include at ./boot.jl:317 [inlined]
[9] include_relative(::Module, ::String) at ./loading.jl:1038
[10] include(::Module, ::String) at ./sysimg.jl:29
[11] top-level scope at none:2
[12] eval at ./boot.jl:319 [inlined]
[13] eval(::Expr) at ./client.jl:389
[14] top-level scope at ./none:3
in expression starting at /home/duque004/.julia/packages/Queryverse/PUhwL/src/Queryverse.jl:10
ERROR: Failed to precompile Queryverse [612083be-0b0f-5412-89c1-4e7c75506a58] to /home/duque004/.julia/compiled/v1.0/Queryverse/hLJnW.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] macro expansion at ./logging.jl:313 [inlined]
[3] compilecache(::Base.PkgId, ::String) at ./loading.jl:1184
[4] _require(::Base.PkgId) at ./logging.jl:311
[5] require(::Base.PkgId) at ./loading.jl:852
[6] macro expansion at ./logging.jl:311 [inlined]
[7] require(::Module, ::Symbol) at ./loading.jl:834
julia>
I maybe will not dig into why, as I'm mostly using 1.6, I thought you liked to know what users can expect (and maybe it's about me having lots of packages so I get downgrades sometimes, if I recall when installing Queryverse):
julia> @time using Queryverse
[ Info: Precompiling Queryverse [612083be-0b0f-5412-89c1-4e7c75506a58]
ERROR: LoadError: LoadError: LoadError: Cannot read stream serialized with a newer version of Julia.
Got data version 12 > current version 10
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] readheader(::Serialization.Serializer{IOStream}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl:715
[3] handle_deserialize(::Serialization.Serializer{IOStream}, ::Int32) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl:878
[4] deserialize(::Serialization.Serializer{IOStream}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl:773
[5] deserialize at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl:760 [inlined]
[6] open(::typeof(Serialization.deserialize), ::String, ::Vararg{String,N} where N; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at ./io.jl:325
[7] open at ./io.jl:323 [inlined]
[8] (::TimeZones.var"#3#4"{String})() at /home/pharaldsson_sym/.julia/packages/TimeZones/v0mfN/src/types/timezone.jl:50
[9] get!(::TimeZones.var"#3#4"{String}, ::Dict{String,Tuple{Dates.TimeZone,TimeZones.Class}}, ::String) at ./dict.jl:450
[10] Dates.TimeZone(::String, ::TimeZones.Class) at /home/pharaldsson_sym/.julia/packages/TimeZones/v0mfN/src/types/timezone.jl:46 (repeats 2 times)
[11] @tz_str(::LineNumberNode, ::Module, ::Any) at /home/pharaldsson_sym/.julia/packages/TimeZones/v0mfN/src/types/timezone.jl:86
[12] include(::Function, ::Module, ::String) at ./Base.jl:380
[13] include at ./Base.jl:368 [inlined]
[14] include(::String) at /home/pharaldsson_sym/.julia/packages/Intervals/T6hJb/src/Intervals.jl:1
[15] top-level scope at /home/pharaldsson_sym/.julia/packages/Intervals/T6hJb/src/Intervals.jl:28
[16] include(::Function, ::Module, ::String) at ./Base.jl:380
[17] include(::Module, ::String) at ./Base.jl:368
[18] top-level scope at none:2
[19] eval at ./boot.jl:331 [inlined]
[20] eval(::Expr) at ./client.jl:467
[21] top-level scope at ./none:3
in expression starting at /home/pharaldsson_sym/.julia/packages/Intervals/T6hJb/src/interval.jl:153
in expression starting at /home/pharaldsson_sym/.julia/packages/Intervals/T6hJb/src/interval.jl:152
in expression starting at /home/pharaldsson_sym/.julia/packages/Intervals/T6hJb/src/Intervals.jl:28
ERROR: LoadError: Failed to precompile Intervals [d8418881-c3e1-53bb-8760-2df7ec849ed5] to /home/pharaldsson_sym/.julia/compiled/v1.5/Intervals/ihXRn_ZZkGX.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1305
[3] _require(::Base.PkgId) at ./loading.jl:1030
[4] require(::Base.PkgId) at ./loading.jl:928
[5] require(::Module, ::Symbol) at ./loading.jl:923
[6] include(::Function, ::Module, ::String) at ./Base.jl:380
[7] include(::Module, ::String) at ./Base.jl:368
[8] top-level scope at none:2
[9] eval at ./boot.jl:331 [inlined]
[10] eval(::Expr) at ./client.jl:467
[11] top-level scope at ./none:3
in expression starting at /home/pharaldsson_sym/.julia/packages/Polynomials/nqKiM/src/Polynomials.jl:4
ERROR: LoadError: Failed to precompile Polynomials [f27b6e38-b328-58d1-80ce-0feddd5e7a45] to /home/pharaldsson_sym/.julia/compiled/v1.5/Polynomials/OaK78_ZZkGX.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1305
[3] _require(::Base.PkgId) at ./loading.jl:1030
[4] require(::Base.PkgId) at ./loading.jl:928
[5] require(::Module, ::Symbol) at ./loading.jl:923
[6] include(::Function, ::Module, ::String) at ./Base.jl:380
[7] include(::Module, ::String) at ./Base.jl:368
[8] top-level scope at none:2
[9] eval at ./boot.jl:331 [inlined]
[10] eval(::Expr) at ./client.jl:467
[11] top-level scope at ./none:3
in expression starting at /home/pharaldsson_sym/.julia/packages/DoubleFloats/s9LZK/src/DoubleFloats.jl:44
ERROR: LoadError: Failed to precompile DoubleFloats [497a8b3b-efae-58df-a0af-a86822472b78] to /home/pharaldsson_sym/.julia/compiled/v1.5/DoubleFloats/KzTCm_ZZkGX.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1305
[3] _require(::Base.PkgId) at ./loading.jl:1030
[4] require(::Base.PkgId) at ./loading.jl:928
[5] require(::Module, ::Symbol) at ./loading.jl:923
[6] include(::Function, ::Module, ::String) at ./Base.jl:380
[7] include(::Module, ::String) at ./Base.jl:368
[8] top-level scope at none:2
[9] eval at ./boot.jl:331 [inlined]
[10] eval(::Expr) at ./client.jl:467
[11] top-level scope at ./none:3
in expression starting at /home/pharaldsson_sym/.julia/packages/TextParse/EETm2/src/TextParse.jl:3
ERROR: LoadError: Failed to precompile TextParse [e0df1984-e451-5cb5-8b61-797a481e67e3] to /home/pharaldsson_sym/.julia/compiled/v1.5/TextParse/Ry2K3_ZZkGX.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1305
[3] _require(::Base.PkgId) at ./loading.jl:1030
[4] require(::Base.PkgId) at ./loading.jl:928
[5] require(::Module, ::Symbol) at ./loading.jl:923
[6] include(::Function, ::Module, ::String) at ./Base.jl:380
[7] include(::Module, ::String) at ./Base.jl:368
[8] top-level scope at none:2
[9] eval at ./boot.jl:331 [inlined]
[10] eval(::Expr) at ./client.jl:467
[11] top-level scope at ./none:3
in expression starting at /home/pharaldsson_sym/.julia/packages/CSVFiles/C68zw/src/CSVFiles.jl:3
ERROR: LoadError: Failed to precompile CSVFiles [5d742f6a-9f54-50ce-8119-2520741973ca] to /home/pharaldsson_sym/.julia/compiled/v1.5/CSVFiles/kq3Uy_ZZkGX.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1305
[3] _require(::Base.PkgId) at ./loading.jl:1030
[4] require(::Base.PkgId) at ./loading.jl:928
[5] require(::Module, ::Symbol) at ./loading.jl:923
[6] include(::Function, ::Module, ::String) at ./Base.jl:380
[7] include(::Module, ::String) at ./Base.jl:368
[8] top-level scope at none:2
[9] eval at ./boot.jl:331 [inlined]
[10] eval(::Expr) at ./client.jl:467
[11] top-level scope at ./none:3
in expression starting at /home/pharaldsson_sym/.julia/packages/Queryverse/hqsvz/src/Queryverse.jl:13
ERROR: Failed to precompile Queryverse [612083be-0b0f-5412-89c1-4e7c75506a58] to /home/pharaldsson_sym/.julia/compiled/v1.5/Queryverse/hLJnW_ZZkGX.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1305
[3] _require(::Base.PkgId) at ./loading.jl:1030
[4] require(::Base.PkgId) at ./loading.jl:928
[5] require(::Module, ::Symbol) at ./loading.jl:923
[6] top-level scope at timing.jl:174
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