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aanet

Archetypal Analysis network (AAnet)

aanet_torch

booleanmodel_soce

This repository contains the pipelines to simulate the boolean network for SOCE/BRAFi network.

coati

Calcium oscillation analysis tool

dip_rate_natmeth2016

dipdrc

Code for analyzing dose-response curves using DIP rate as the effect metric

emt_sclc_project

footprintmethods_on_scrnaseq

Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data

ges_2021

Code (data analysis and model simulations) for GES paper (2020).

groves-cellsys2022

Code and figures related to Groves et al. submitted to Cell Systems 2021

manuscript-code

Code used in publications

mazebox

A collection of bioinformatics tools for analyzing single-cell transcriptomics data.

musyc-web

Musyc web app

musyc_cell

notch_model_sclc

notchdynamics_sclc

practice_repo

Just a repo to play with for learning how to use git

qulab-vu.github.io

Public GitHub Pages site for The Quaranta Lab at Vanderbilt University

rt-glow

samap

SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.

sclc-cancer-cell-manuscript

segmentation-matlab

sequencing_pipelines

stauffer_et_al_2024

tempo_code

Repository for code developed for various projects on the Tempo server.

tips_review_2020

Repository for code related to Meyer et al. Trends in Pharmacological Sciences Review

yap-taz-model