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Rabix has grown up!

Reproducible Analyses for Bioinformatics is now a reality!

Please see

If you want to see the old documentation for the project please see here

Rabix's Projects

benten icon benten

A language server for Common Workflow Language

bunny icon bunny

[Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0

cliche icon cliche

[Historical] An ancestor of Rabix Composer

composer icon composer

Visual and code editor for Common Workflow Language

cwl-svg icon cwl-svg

A library for generating an interactive SVG visualization of CWL workflows

cwl-ts icon cwl-ts

Typescript data model for Common Workflow Language

experiments icon experiments

[Historical] Precursor experiments that led to Rabix Composer/Executor and CWL

fhir2metabridge icon fhir2metabridge

Quick FHIR import data from INCLUDE FHIR Server to set metadata of interest

rabix icon rabix

[Historical] Reproducible Analyses for Bioinformatics

registry icon registry

[Historical] An early prototype for some rabix tools

sb-ci icon sb-ci

Facilitating a local -> Seven Bridges platform development model. Using pre-commit hooks to test CWL with cwltool, and Github Actions + sbpack to deploy workflows to an SB platform.

sb-run icon sb-run

Command line tool to upload CWL from local disk to a SB powered platform and run it there

sbpack icon sbpack

Command line utility to pack and upload/download CWL to/from SB powered platform

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