Comments (3)
I found a temporary solution.
In the file makeCNVcalls.R at line 171, I added a print(brca) to see which genes were the problem.
I removed some of those genes and I run ReadInBams again with the new panel.
In this case makeCNVCalls worked.
from decon.
Hi, I have the same problem with my dataset.
Any suggestion?
from decon.
Hi Smeralla,
Can you please share your makeCNVcalls.R file for reference? I am also getting the same error.
Thank you
from decon.
Related Issues (20)
- ERROR when running makeCNVcalls.R HOT 6
- makeCNVcalls.R failed HOT 11
- Installation Issue
- error when running ReadInBams.R
- Error when running makeCNVcalls.R
- makeCNVcalls.R Error in cnv.calls_ids[i, ]$start.p:cnv.calls_ids[i, ]$end.p : HOT 5
- Rsamtools version not compatible with VN:1.4 BAM files?
- Error in running IdentifyFailures HOT 1
- Congratulations! HOT 2
- IdentifyFailures Error HOT 3
- Error in if (MaxCorr[i] < corr_thresh) { : missing value where TRUE/FALSE needed HOT 2
- Installation of DECoN failed HOT 1
- samples off by one HOT 3
- DECoN installation error HOT 5
- Problem while running Rscript makeCNVcalls.R HOT 2
- CNV offsets by one in makeCNVcalls. HOT 1
- DECoN v2.0.1 installation error, Rscript error and question. HOT 4
- How to select meaningful CNVs?
- Differences between V1 and V2
- DECoN packages management
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