Vivek Rai's Projects
Code Repository for Satpathy Granja et al 2019
A day to day log of my research intern
Daily log, resources and collection of other notes during QSB 2015 Winter School
Genome Annotation for the Masses
Interactive lessons in bioinformatics.
A toolkit for QC and visualization of ATAC-seq results.
2018 Recommended Papers to Read in Bioinformatics as Voted by Bioinformaticians
Curated (meta)list of resources for Biology.
:books: List of awesome university courses for learning Computer Science!
A curated list of awesome ggplot2 tutorials, packages etc.
An awesome list of high-quality open datasets in public domains (on-going).
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
Nextflow tutorial for the BADAS series at NYU Center for Genomics and Systems Biology
Reimplementation of BasClu algorithm by Liu et al (2019)
Singularity definition files for various bioinformatics tasks
my daily drivers
Conda recipes for the bioconda channel.
Utilities for building and managing bioconda recipes
Bioinformatics 529 - Bioinformatics Concepts and Algorithms
Unsorted scripts for bioinformatics
Awk, bash, python scripts for processing NGS data
A list of useful bioinformatics resources
R package with motifs for use with chromVAR
Quickly lookup how to convert common bioinformatics file formats
Snakemake pipeline using cookiecutter
Jupyter notebook based genomic data visulization toolkit.
Notes and additional material related to my college courses
C++ implementation of Buenrostro adapter trimming