Build with R markdown (.Rmd) about r-box

[jvcasillas]

I currently have the same issue. When I ran a system check using LaTeXing it showed the Rscript was missing. I reinstalled the latest version of R and the system check now finds Rscript, but I still get the same error that @hungmtuci mentions above.

[hungmtuci]

I found one temporary solution to display the figure in .md file.

If you run the command knit() in terminal by copying from the Sublime console. The figure folder will be created in ~\user.

Fortunately, if you open R

1. run setwd("\folder containing file .Rmd")
2. run knit("file.Rmd")

The figure folder and file.md are both generated in \folder containing file .Rmd. Now you can open file.md with figures.

The advantage when you run knit() in R or in terminal. It will stop if the chunk has error, the errors will be appeared in the result. But if you run through the Rstudio or by other command, file building will be stopped immediately when the chunks get issue.

Hope someone can fix this, and just simple run direct from sublime

[jvcasillas]

Just to add a bit more, I've been told elsewhere to add /usr/local/bin to my path in ~/.bash_profile, but this did nothing for me.

[cnjr2]

I have exactly the same setup as @hungmtuci: I use Sublime text 3 in Mac OS 10.11 with R 3.2.2 and R-Box 2.6.6 and get the same error.

[randy3k]

It is because the PATH variable is handled differently in MAC OS applications. A possible fix is
by https://github.com/int3h/SublimeFixMacPath