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a.thaliana_clr_vs_hifi

alignment-and-variant-calling-tutorial

basic walk-throughs for alignment and variant calling from NGS sequencing data

applied-computational-genomics

Applied Computational Genomics Course at UU: Spring 2018

appliedgenomics2018

Materials for Spring 2018 Applied Genomics Course

awesome-bioinformatics

Collection of bioinformatics links - run by the WUBSyB community

awesome-r

A curated list of awesome R packages, frameworks and software.

awk-sed

bioinformatics-one-liners

Bioinformatics one liners from Ming Tang

biotools

A list of useful bioinformatics resources

bovine-graphs

Integrate multiple genome assemblies into a pangenome graph

code_ae_tauschiidiversity

Code and scripts for Ae. tauschii diversity analysis

data-science--cheat-sheet

Cheat Sheets

datastructures2018

Materials for JHU Data Structures 2018

friendsdontletfriends

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

github-cheat-sheet

A list of cool features of Git and GitHub.

hgsvc

building variation graphs from hgsvc data

jasen

Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.

lab_wiki

markdown-editor

Live (Github-flavored) Markdown Editor

nano_diagnositcs

Documentation of analyses and commands used as part of the PhD project investigating next generation diagnostics

paragraph

Graph realignment tools for structural variants

pbbioconda

PacBio Secondary Analysis Tools on Bioconda

plantsandpython

probabilistic-programming-and-bayesian-methods-for-hackers

aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)

python

All Algorithms implemented in Python

python-data-analysis_julinm

python-for-bioinformatics

Python for Bioinformatics consist of a variety of python programmes,frequently used by bioinformaticians while handling biological data especially raw NGS data.

pythonforbioinformatics

This repository will be helpful to start using python for your Bioinformatics projects.

r-ecology-lesson

Data Carpentry R lessons on ecology

r-for-plant-breeding

R for Plant Breeding is open source resource to lear the Plant Breeding and Genetics related data analysis and visualizations