Name: marcin p. joachimiak
Type: User
Company: Lawrence Berkeley National Laboratory
Bio: Staff Researcher and Software Developer at LBNL. Interests:
Computational Biology / Systems Biology / Machine Learning / Deep Learning / Knowledge Graphs
Twitter: realmarcin
marcin p. joachimiak's Projects
Homepages for the Berkeley BOP.
analysis of biosamples in INSDC
Notebooks for answering competency questions
Towards a unified data api for KBase
High level documents regarding the design and architecture of KBase
Embedding generator - embiggen
Repository containing experiments executed on Embiggen/Ensmallen
Rust library to run weighted random walks on very big graphs.
feature values
The KBase genome browser
Build and test new Apps for the KBase platorm
kbase-ui components
KG hub for COVID-19 and related emerging viruses
data requiring UI interaction to download, fairly static, small files -- supporting kg-covid-19
knowledge graph exchange tools for biolink-compatible graphs
Massive Associative K-biclustering
A repository for input data, MAK results, and related analysis.
Supplementary Materials for Tshitoyan et al. "Unsupervised word embeddings capture latent knowledge from materials science literature", Nature (2019).
Conversion of schemas/templates/metadata to biolinkml
Experimental linkml rendering of model cards