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10x_ont_technote-2024

3d-dna-docker

adaptive_sampler_check

allpathslg

Dockerfile for the de novo assembler ALLPATHS-LG

anglerfish

Anglerfish - Nanopore reads from Illumina libraries

bcbb

Useful bioinformatics code, primarily in Python and R

bioconda-recipes

Conda recipes for the bioconda channel.

cloudbiolinux

CloudBioLinux: automating resource preparation for biological analysis

cookiecutter

Template for your own top-end Nextflow pipeline, customised using Cookiecutter

deployment

Ansible repository for deployment stuff

docker-airsonic-advanced

dovetail-hichip-singularity

fast5mod-singularity

flames-docker

Unofficial docker image for flames

frcbam-singularity

Singularity bootstrap script for FRCbam

gaas

Will contain all development done by the GAAS (Genome Assembly Annotation Service).

hic

Analysis of Chromosome Conformation Capture data (Hi-C)

hicscaff

hpc-scripts

hugin

Status monitor

juicer

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

juicer-cpu-docker

juicer-singularity

Singularity bootstrap script for CPU version Juicer

merged_nodups2bed

mitovgp

The Vertebrate Genomes Project Mitogenome Assembly Pipeline

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

multiqc_testdata

Test data for MultiQC. See https://github.com/ewels/MultiQC

nbis_hic_curation_course_2022

nf-core-neutronstar

Main fork is here: https://github.com/SciLifeLab/NGI-NeutronStar