Comments (1)
DataSpott
commented on June 25, 2024
1
If using a custom primer.bed-file that contains an error the whole artic_ncov_wf:artic_medaka_custom_bed-process fails with error:20.
Looking into the workdir, the process failed at follwoing command command (not given in process-script):
Command failed:artic-tools check_vcf --summaryOut 6238aa8d4c66a472bb0a0b37.vcfreport.txt 6238aa8d4c66a472bb0a0b37.merged.vcf.gz primer_scheme/nCoV-2019/V_custom/nCoV-2019.scheme.bed 2> 6238aa8d4c66a472bb0a0b37.vcfcheck.log
6238aa8d4c66a472bb0a0b37.vcfcheck.log holds then the cause for the error of the command (here a wrong named primer-pair).
from porecov.
Related Issues (20)
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from porecov.