Comments (6)
I will check all the filterscripts and outputs on saturday
👌🏻
from what_the_phage.
even though the heatmap is quite "full/unreadable" I like the overview already :)
and yeah it run through. getting more stable now!
somehow virfinder looks broken, but @Stormrider935 is checking out all the values over the next days.
from what_the_phage.
thanks for the test runs 👍
from what_the_phage.
thanks for the test runs 👍
Thanks for the nice pipeline ;) And yes, I also like the output! Already quite impressive how many contigs the other tools detect in comparison to VirSorter. However, still questionable how many of these are FP ;)
from what_the_phage.
in the end every tool claimed to be better than the other... :D
from what_the_phage.
somehow virfinder looks broken, but @Stormrider935 is checking out all the values over the next days.
- Virfinder has been fixed
#37
from what_the_phage.
Related Issues (20)
- "rm" missing in the metaphinder script? HOT 1
- Installation error HOT 3
- Deepvirfinder error HOT 1
- Pharokka for phage annotation HOT 3
- Error with report_heatmap_table.input HOT 2
- Vibrant now working HOT 1
- Tools deactivation HOT 1
- computational cost HOT 1
- A fasta file with all phage-positive contigs? HOT 16
- command not found at download_references step HOT 3
- P-value and score HOT 1
- update gh-pages-monday with new report
- running WtP without containers, using native installation of required tools HOT 3
- Download of sourmash and vibrant databases always fail HOT 4
- Dockerhub link not available? HOT 2
- deepvirfinder uses more cores unexpectly HOT 3
- Testrun failed HOT 1
- Update all tools
- virsorter2 error HOT 3
- extract contigs of interest-- add new process HOT 1
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