rivas-lab Goto Github PK

ancestryomicsukb

Code for the paper: "Using Pre-training and Interaction Modeling for ancestry-specific disease prediction using multiomics data from the UK Biobank"

angptl7

Rare protein-altering variants in ANGPTL7 lower intraocular pressure and protect against glaucoma

biobank-methods-dev

Method development for Biobank datasets

biomarkers

Genetics of blood and urine biomarkers in the UK Biobank

cgauge

covid19

As a part of COVID-19 Host Genetics Initiative, we perform the following set of analyses to better understand the genetic basis of COVID-19 susceptibility and severity.

covid19_hgi

degas-risk

Polygenic risk modeling with latent trait-related genetic components

fastag

FasTag: automatic text classification of unstructured medical narratives

gbe-power-app

Web app for calculating GWAS power using empirical allele frequency estimates.

globalbiobankengine

A resource for the visualization and exploration of genetic and phenotypic data from biobanks

hla-assoc

ibd-exomes

All QC, annotation, and analyses for IBD exomes

lof-enrichment

mrp

Repo for MRP method.

mrpmm

Repo for MRPMM method

multisnpnet-cox

Multiresponse time-to-event Cox proportional hazards model - CPU

multisnpnet-cox-tv

Cox models for time-varying covariate in large population-cohorts

multisnpnet-cox_gpu

Multiresponse time-to-event Cox proportional hazards model - GPU

mvpmm

MultiVariate Polygenic Mixture Model

nanopore

Tools for analysis of long-read sequencing data.

presentations

presentations-readings

Repository for lab presentations (abstracts, posters, talks) and readings.

prs

public-resources

Repository for resources we'd like to share with the community.

rede

A network visualisation tool for probe pairs arising in genome wide association studies. Based on http://d3js.org/

regularizedmr

MR using L1 penalty

scidb-testing

semm

Sex Effects Mixture Model for GWAS summary statistics

sex-diff-biomarker-genetics

Bayesian Mixture Models for identifying sex-specific variants in UKBB data.