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abexpress

Antibody expressability assessment and optimization using LSTM

alphafold

Open source code for AlphaFold.

bakerlab_dotfiles

Configuration files the way we like 'em

binder

Binder, tool for automatic generation of Python bindings

boost_integer

Boost.org integer module

boost_lexical_cast

General literal text conversions, such as an int represented as a string, or vice versa

boost_multi_index

Boost.org multi_index module

deepab

Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.

fvhallucinator

jade2

General repository for python modules and scripts to aid in the design, analysis, and modeling of biomolecules.

libzmq

ZeroMQ core engine in C++, implements ZMTP/3.1

mmtf-cpp

The pure C++ implementation of the MMTF API, decoder and encoder.

privileged_residues

protein_generator

Joint sequence and structure generation with RoseTTAFold sequence space diffusion

pybind11

Seamless operability between C++11 and Python

pyrosetta.notebooks

Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design

pyrosetta_colab_setup

Files for our auxiliary pyrosetta_colab_setup PyPI package

pyrosetta_viewer3d

Display PackedPose objects, Pose objects, or PDB files within a Jupyter notebook and Google Colab

pyrosettascripts_demo

Demonstration python-rosettascripts integration repo.

rdkit

The official sources for the RDKit library

rfdesign

Protein hallucination and inpainting with RoseTTAFold

rfdiffusion

Code for running RFdiffusion

rosetta-dl

A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons

rosetta_clone_tools

A public repository with scripts and tools for cloning and setting up RosettaCommons repositories.

rosettafold

This package contains deep learning models and related scripts for RoseTTAFold

tensorflow_graphs

trRosetta model binaries for using the trRosetta protocol within Rosetta proper

trrosetta2

Repository for publicly available deep learning models developed in Rosetta community