Name: Robert A. Petit III
Type: User
Company: Wyoming Public Health Laboratory
Bio: Bioinformatician at the Wyoming Public Health Laboratory. Developer of the Bactopia and other microbial genomic tools.
Twitter: rpetit3
Location: Cheyenne, WY
Blog: https://www.robertpetit.com/
Robert A. Petit III's Projects
Unofficial Windower Addons
basic scripts for server administration
Tools test whether admixture occurred and more
Source for adventofcode.com challenge
Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.
Bacillus anthracis identification in metagenomic sequencing.
Convert various bioinformatic outputs to TSV
Antimicrobial Resistance Identification By Assembly
Generate basic stats for an assembly.
A curated list of awesome Bioinformatics libraries and software.
A curated list of nextflow based pipelines
A flexible pipeline for complete analysis of bacterial genomes
Functions I keep in my .bash files. Usually written badly by myself (to handle only very specific cases) or also possibly stolen off the internetz
BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data
A comparison of bioinformatic tools (qc, assembly, variant, etc...) for bacterial genomics.
Personal bioinformatic related scripts that need a home.
Perl modules and scripts for interfacing with Sean Eddy's C easel sequence analysis library using Perl's Inline.
Container images for usage inside of Bioconda
Conda recipes for the bioconda channel.
Utilities for building and managing bioconda recipes
A fast and sensitive gapped read aligner
SC2 variant detection and composition pipeline
A ruffus pipeline to call variants following GATK best practices.
๐ชClassification through yAML Heuristic Mapping Protocol ๐ช
Reference-based consensus creation
A set of scripts used for interfacing with the Cancer Genomics Cloud platform.
Clermont PCR method In-Silico
Gene cluster comparison figure generator