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align_bench

Benchmark tool to evaluate the alignment algorithms in SeqAn.

app-template

This is a template for app developers with SeqAn3. You can easily clone this repository and modify the existing code to your needs. It provides the elementary set-up for all SeqAn3 applications.

awesome-agile

Awesome List of resources on Agile Software Development.

bam_bench

calliopesnippets

Ein MakeCode-Projekt

chef-repo

A blank Chef repository - use as a base to build your own

chopper

A tool for partitioning a set of sequences into similar batches.

controlnet

Let us control diffusion models!

de.seqan.knime.gasic

KNIME nodes necessary to realize the GASiC approach in KNIME.

dynamicplugingeneration

Generating plugins based on DynamicGKN from binaries and their CTDs. Building local update sites with buckminster.

epr

example-cpp11-cmake

gdf_tools

GDF Tools to compress and manipulate files in gdf format.

genericknimenodes

Base package for GenericKnimeNodes

git-novice

Software Carpentry introduction to Git for novices.

homebrew-bio

:beer::microscope: Bioinformatics formulae for the Homebrew and Linuxbrew package managers

htslib

C library for high-throughput sequencing data formats

jenkins_integration_test

Test integration and CI and CD on travis

jst_bench

JST Benchmark

jstmap

learning-resources

Provides online material and tutorials for modern C++, efficient data structures and algorithms.

lib_template

This template provides a common structure used to develop a new SeqAn module library.

libsimdpp

Header-only zero-overhead C++ wrapper for SIMD intrinsics of multiple instruction sets

macports-ports

The MacPorts ports tree

needle

Fast and efficient searches of NGS data

pairwise_aligner

The core pairwise alignment contribution to the SeqAn library.

parasail

Pairwise Sequence Alignment Library

privategpt

Interact with your documents using the power of GPT, 100% privately, no data leaks

product_backlog

This repository is used as product backlog for all SeqAn relevant backlog items. This is intended to organise the work for the team.

raptor

A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.